Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02386 ATGAGACTGAAGGAGATGCAGAAGCAACTGACCAGACTGACCGTGGTGTTACTGATGGCAGTAGCAGCAGCCAGCCAAGCCCTGCCCGGCTGCCCGAACTCCTGCGGAAGTGTTTCATCGATTCCGTATCCATTTGGCGTCGGCAATTCATCCGTCAGCGGTAAAAACTGTTTTCTGGAGAGCGACTTGGAGCTCACATGCAGAAACTCAACCTTATATCACGGTGACGGTAACGTCGAAATTCTGAACATAAGCCTCGCCGGTAAAATCGACATGCTCTCCTACATCTCTGTGGTCTGCAAAAACAAATCGTTAGGTAAAGACGAAACACCGGGCGACTATGTCAGTCTCACAACACCGGCTTTTGCCATTTCTAGTGAGGACAACAAGTTCGTGACCATAGGCTGTGATACCTACGGCTATCTCAGCAGTTTCTGGAACGGCACACAATCTTCAACGGGGTGCTTGAGCAGATGCGACACCTTAGAGAGCGTTGAAAGAAGCATGCAGAGAAGTGGAAACTGCACCGGCACAGGGTGTTGCCAGGTCGACATTCCTCCTCGGATGAACAACATCTCTGTTGAAGCTTTCTCCTTCAACAATTTCAATTCCACTTCCGATTTCAATGACTGTGGCTACTCCTTCGTCGTCAAAAACGGCAACTACACTTTCTCCGTCGATCATTTAAGCGGCGCCCCGGTCAATAATAATATGACAACTCTTGTCGTGGAATGGAGCGTTGGAAGCGACACGTGCGAAGCTTCCATGCTCAGAGCAGATTATGCATGCAAGAGTAATTATAGCGAGTGTGAGAACTCCACGTTTGAATATGGTTACCGATGCAAATGTAAACAAGGCTTTCAGGGAAACGCTTACCTTCTCGATGGCTGCGAAGACATTCCTGAGTGTAGTAGTAACAAACACAATTGCGATAGTAAAGATCATTGTCGTGAAACTCCGGGCTCTTTTGAATGTTTCTGTCCTGTCGGACTTATCGGAAATGGGACAAAAGAAGGCGGAGGATGTCACCCAAGGCAGCCGGCCGATGCTTTTAAGAAGATCGTCATCGGCGCAGGTGCAGGATTAATTGCTCTGTTCATAGGAATTTCTTGGTTGTACTTAATGTATCAGAAAAGGAAAAGCATAAAATTAAAGCAGAAGTTTTTTCAGCAGAACGGAGGCATCATTCTGAGACAACAACTCTCCACAGAAGAAGACTCATCTCAGACCACTACAATTTTCAGTGCAGAACAACTTAAGAAAGCCACCAAGAATTTTGATGAGAGCTTAATCATCGGTAAAGGAGGTTATGGTACAGTTTTCAAAGGAGTTCTCTCAAATAACAAAGTTGTAGCTATCAAAAAATCAAAGATAGTGGATCAGAGCCAGGTGGAACAATTCATCAATGAGGTCATTATACTGTCACAGATCAATCATAGGAATGTGGTGAAACTGTTAGGATGTTGTCTGGAGACAGAAGTTCCTTTACTAGTCTATGAATTTGTTAACAATGGCACCCTTTATGATTATTTGCATAACCAAGGTCAGGGAGTAAATGTGTCATGGAAAACACGTCTAAGGATAGCTACAGAAGCAGCTGCAGCTCTATCATATTTGCACTCAGAAGCTTGCATACCCATCATCCACAGAGATGTGAAGACTGCTAACATACTCTTAGATGACACTTACACTGCAAAAGTTTCTGACTTTGGAGCTTCAAGATTGGTTCCAATTGACCATACTGAGATAACCACAATTGTGCAAGGGACCTTGGGGTATTTAGACCCGGAGTACATGCAATCAAGCCAATTGACAGAAAAGAGTGATGTCTATAGTTTTGGGGTAGTGCTTGTAGAACTTCTTACAGGGGAGAAAGCTTTTTCTTTTTCCAGGGCAGAAGAGCAACGAAGTCTTACAGTTCACTTTCTATGTAGCTTGAAAGAGGATCGTCTGTTTGATGTTATTCAGGTGGGACTTTTGGATGAGGAAAACCAGCAGGAGATTATGCAGGTTGCTATTCTTGCTGCAAGATGCTTGAGACTTATAGGGGAGGAAAGGCCTAGCATGAAAGAAGTGACAATGGAACTAGAGGGAATAAAGCTTACGAAGAAAGACCCTGGCATCAATACAGACAAAATTTGTAATGAGAGTCAATACTTACTTCGTGAGACACAGAACTCTTATGAACACGGTGACACTAGCAGCCAACAAAATACTGAATATGATAGCTTGAGAGAACACGAAGTAATTGATTTCGGTAATGGAAGATGA 2271 0.4386 MRLKEMQKQLTRLTVVLLMAVAAASQALPGCPNSCGSVSSIPYPFGVGNSSVSGKNCFLESDLELTCRNSTLYHGDGNVEILNISLAGKIDMLSYISVVCKNKSLGKDETPGDYVSLTTPAFAISSEDNKFVTIGCDTYGYLSSFWNGTQSSTGCLSRCDTLESVERSMQRSGNCTGTGCCQVDIPPRMNNISVEAFSFNNFNSTSDFNDCGYSFVVKNGNYTFSVDHLSGAPVNNNMTTLVVEWSVGSDTCEASMLRADYACKSNYSECENSTFEYGYRCKCKQGFQGNAYLLDGCEDIPECSSNKHNCDSKDHCRETPGSFECFCPVGLIGNGTKEGGGCHPRQPADAFKKIVIGAGAGLIALFIGISWLYLMYQKRKSIKLKQKFFQQNGGIILRQQLSTEEDSSQTTTIFSAEQLKKATKNFDESLIIGKGGYGTVFKGVLSNNKVVAIKKSKIVDQSQVEQFINEVIILSQINHRNVVKLLGCCLETEVPLLVYEFVNNGTLYDYLHNQGQGVNVSWKTRLRIATEAAAALSYLHSEACIPIIHRDVKTANILLDDTYTAKVSDFGASRLVPIDHTEITTIVQGTLGYLDPEYMQSSQLTEKSDVYSFGVVLVELLTGEKAFSFSRAEEQRSLTVHFLCSLKEDRLFDVIQVGLLDEENQQEIMQVAILAARCLRLIGEERPSMKEVTMELEGIKLTKKDPGINTDKICNESQYLLRETQNSYEHGDTSSQQNTEYDSLREHEVIDFGNGR 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02386 756 FunFam Fibrillin 2 294 338 - -
Vimu1g02386 756 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 23 709 IPR045274 GO:0007166
Vimu1g02386 756 Pfam Protein kinase domain 430 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02386 756 ProSitePatterns Serine/Threonine protein kinases active-site signature. 547 559 IPR008271 GO:0004672|GO:0006468
Vimu1g02386 756 CDD STKc_IRAK 432 699 - -
Vimu1g02386 756 MobiDBLite consensus disorder prediction 725 756 - -
Vimu1g02386 756 SMART egf_5 302 343 IPR000742 -
Vimu1g02386 756 SMART egf_5 251 298 IPR000742 -
Vimu1g02386 756 ProSitePatterns Protein kinases ATP-binding region signature. 432 455 IPR017441 GO:0005524
Vimu1g02386 756 SUPERFAMILY Protein kinase-like (PK-like) 406 697 IPR011009 -
Vimu1g02386 756 Pfam EGF domain 303 336 IPR024731 -
Vimu1g02386 756 FunFam Wall-associated receptor kinase 2 396 501 - -
Vimu1g02386 756 Gene3D Laminin 249 340 - -
Vimu1g02386 756 SMART serkin_6 426 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02386 756 SUPERFAMILY EGF/Laminin 299 334 - -
Vimu1g02386 756 ProSiteProfiles EGF-like domain profile. 299 337 IPR000742 -
Vimu1g02386 756 CDD EGF_CA 299 333 - -
Vimu1g02386 756 FunFam Wall-associated receptor kinase 2 502 719 - -
Vimu1g02386 756 MobiDBLite consensus disorder prediction 725 740 - -
Vimu1g02386 756 MobiDBLite consensus disorder prediction 741 756 - -
Vimu1g02386 756 Gene3D Transferase(Phosphotransferase) domain 1 502 718 - -
Vimu1g02386 756 Gene3D Phosphorylase Kinase; domain 1 392 501 - -
Vimu1g02386 756 ProSiteProfiles Protein kinase domain profile. 426 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02386 Vimu-Chr1 34518936 34521772 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02386 10 756 Receptor kinase-like Gene Family AT1G21230 43.857 0.0 579
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vimu1g02386 Pkinase 9.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02386 - - gmx:100819535 1068.53