Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02382 ATGGCAACAATGAGATCGAAGGAGATGCAGAAGCAACTGACCAGACTGACCGTGGTGTTACTGATGGCAGTAGCAGCAGCCAGCCAAGCCCTGCCCGGCTGCCTGGACTCCTGCGGAATTGTTTCTTCGATTCCGTATCCATTCGGCATCGGCACTTCCGTCACCGATGAAAACTGTTTTCTGGAGAGCGAATTGAAGCTCACATGCACAAACTCAACCTTATATCACGGTGAGGGCAACGTCCAAATTCTTAACATAAGCCTCGCCGGTAAAATCGATATTCTCACCTTAATCTCCGAGATCTGCAAAAACGACTTGCTAGGTGGAGTAAAAACATACGGCAACGATCACTTTCTCATAACACCGGCTTTCGCCATTTCTAGTGAGGACAACAAGTTCGTGAGCGTAGGCTGCGATACCTACGGTTATCTCAACAGTTTCCGGAACGGCACACGATCTTCAACGGGGTGCTTGACCAGATGCAACACCTTTGAGAGCGTTGAAAGCATGCAGAGAAGTGGAAACTGCACCGGCATAGGGTGTTGCCAGGTCGACATTCCTCCTGGGATGAAGAACATTACTTTTGAAGCTTTCTCCTTCAACAATTTCAATTTCACTTCCGATTTCAACAAGTGTGGCTACTCCTTCGTCGTCAAAAACGGCAACTACACTTTCTCCGTCGATCATTTAAGCGGCCTCCCGTTCAATATGACACCTATTGTCATGGATTGGAGCGTTGGAAGCGACACGTGCGAAGCTTCCATGCTCAGAGCAGATTATGCATGCAAGAGTCCTTATAGCGAGTGTGAGAACTCCCCGTTTGAATATGGCTACCGATGCAAATGTAAACCTGGGTTTCAGGGAAACGCCTACCTTCTCCATGGCTGCCAAGTAATAACAAACACAATTGCGATAGTAAAGATCATTGTCGTGAAACTTCGGGCTCTTTTGAATGTTTCTGTCCTGACGGACTTATCGGAAATGGGACAAAAGAAGGCGGAGGATGCCACCCAAGGCAGCCGGCCGATGCTTTTACGAAGATCGTCATCGTTTTTTAACACGTGGCATGCTGACGCTTCCAGGTGGCACCGTTTCAAGTGCATAGGTGCCGGTGTAGGGTTAATTGTTCTGTTCATAGGGATTTCTTGGTTGTACTTAATGTACCAAAAAAGGAAAGTCTTGAAATTAAAGCAGAAGTTTTTTCAGCAGAACGGAGGTATCATTCTGAGACAACAACTCTCCGCAAAAGAAGACTCATCTCAGACCACTACAATTTTCAGTGCAGAACAACTTAAGAAAGCCACCAACAATTTTGATGAGAGCTTAATCATAGGTAAAGGAGGTTATGGTACAGTTTTCAAAGGATTACTCTCCAACAACAAAGTTGTAGCAATCAAAAAGTCCAAAATAGTGGATCGGAGCCAGGTGGAACAATTCATTAATGAGGTCATTATACTGTCACAGATTAATCACAGGAATGTGGTCAAACTCTTGGGATGTTGTCTGGAGACAGAAGTTCCTTTACTAGTCTATGAATTTGTTAACAATGGCACCCTTTTTGATTATTTACATAACCAAGGTCAGGGAGTAAATGTGTCATGGAAAACACGTCTAAGGATAGCTACAGAAGCAGCTGCTGCTCTATCATATTTGCACTCAGCAGCTTGCATACCCATCATCCACAGAGATGTGAAGACTGCTAACATACTCTTAGATGACACTTACACTGCCAAAGTTTCTGACTTTGGAGCTTCAAGATTGGTTCCACTTGACCAAACTGAAATAGCCACAATTGTGCAAGGAACCTTTGGGTATTTAGACCCAGAATACATGCAATCAAGCCAGTTGACTGAAAAGAGTGATGTCTATAGCTTTGGGGTGGTTCTTATAGAGTTGCTAACGGGGGAGAAACCTTTCTCTTTTGATAGGGCAGAAGAGAAACGAAGTCTTACAGGTCACTTTCTAAGTAGCTTGAAAGAGGATCGTCTGTTTGATGTTCTTCAGGTAGGACTTTTGGATGAAGAAAACCAGCAGGAGATTATGCAGGTTGCTATTCTTGCTGCTAGATGCCTGAGACTTACAGGGGAGGAAAGACCTACCATGAAGGAATTGACAATGGAATTAGAAGGAATAAAGCTTACAGAGAAACACCCTTGGATCAATACAGGAAGGAACTTTGAGGAGAGTGAATACTTGCTTTATGAGGCACAAAGCTCTTACGAACATGGTGATAGTAGTAGTGGCCAACAAAATACTGGATATGATACCTTGAGAGAACTTGAACTAATTGACTTTGGTAATGGAAGATAA 2310 0.4394 MATMRSKEMQKQLTRLTVVLLMAVAAASQALPGCLDSCGIVSSIPYPFGIGTSVTDENCFLESELKLTCTNSTLYHGEGNVQILNISLAGKIDILTLISEICKNDLLGGVKTYGNDHFLITPAFAISSEDNKFVSVGCDTYGYLNSFRNGTRSSTGCLTRCNTFESVESMQRSGNCTGIGCCQVDIPPGMKNITFEAFSFNNFNFTSDFNKCGYSFVVKNGNYTFSVDHLSGLPFNMTPIVMDWSVGSDTCEASMLRADYACKSPYSECENSPFEYGYRCKCKPGFQGNAYLLHGCQVITNTIAIVKIIVVKLRALLNVSVLTDLSEMGQKKAEDATQGSRPMLLRRSSSFFNTWHADASRWHRFKCIGAGVGLIVLFIGISWLYLMYQKRKVLKLKQKFFQQNGGIILRQQLSAKEDSSQTTTIFSAEQLKKATNNFDESLIIGKGGYGTVFKGLLSNNKVVAIKKSKIVDRSQVEQFINEVIILSQINHRNVVKLLGCCLETEVPLLVYEFVNNGTLFDYLHNQGQGVNVSWKTRLRIATEAAAALSYLHSAACIPIIHRDVKTANILLDDTYTAKVSDFGASRLVPLDQTEIATIVQGTFGYLDPEYMQSSQLTEKSDVYSFGVVLIELLTGEKPFSFDRAEEKRSLTGHFLSSLKEDRLFDVLQVGLLDEENQQEIMQVAILAARCLRLTGEERPTMKELTMELEGIKLTEKHPWINTGRNFEESEYLLYEAQSSYEHGDSSSGQQNTGYDTLRELELIDFGNGR 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02382 769 Pfam Wall-associated receptor kinase galacturonan-binding 34 91 IPR025287 GO:0030247
Vimu1g02382 769 ProSitePatterns Protein kinases ATP-binding region signature. 444 467 IPR017441 GO:0005524
Vimu1g02382 769 FunFam Wall-associated receptor kinase 2 408 513 - -
Vimu1g02382 769 ProSiteProfiles Protein kinase domain profile. 438 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02382 769 Gene3D Phosphorylase Kinase; domain 1 404 513 - -
Vimu1g02382 769 FunFam Wall-associated receptor kinase 2 514 731 - -
Vimu1g02382 769 CDD STKc_IRAK 444 711 - -
Vimu1g02382 769 Pfam Protein kinase domain 442 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02382 769 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 26 715 IPR045274 GO:0007166
Vimu1g02382 769 SMART serkin_6 438 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02382 769 Gene3D Transferase(Phosphotransferase) domain 1 514 728 - -
Vimu1g02382 769 ProSitePatterns Serine/Threonine protein kinases active-site signature. 559 571 IPR008271 GO:0004672|GO:0006468
Vimu1g02382 769 SUPERFAMILY Protein kinase-like (PK-like) 420 709 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02382 Vimu-Chr1 34453597 34457197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02382 16 769 Receptor kinase-like Gene Family AT1G21230 41.192 8.21e-176 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vimu1g02382 Pkinase 4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02382 - - gmx:100819535 1013.83