Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02380 TGGTTAGAAACAAATCTTGAAGAGTTTTGGATCTGTTTCCGGGGAAACCCTAGTTTTCTGTCGTGTGTATTTGGAAATTGGGATTCTGTGGAGATGCAAGCTGAGGATGGAACTAGCAATGGTGATAAGTGGGCTGTGTTGGGTAGGAGGTCAGACTCTGAAGATAGAGATTACGAGGGCAGAATTCTAGGTGGAAATAATATTGCTGGTGAAGAAGGTCGGGGCTTGAAGGACGAAGCTTTAAAGGATGGGGTTGTGGTTGAAGGTGAAGAAGTTCGGGGTTTGAAGAAGGAAGCTGTTGATAGTAGGGTGAGTAAAGGTGGGAATGGTATTACTGAAGGTGAAGAAGTGCGGGTCTTGAAGCGTGAAGCTATAAATAATGGGGTGACGCACGAAGGAGGAAATGGTGTTGCAAATAGGAAAGAAGTTTGGGGTTTGAAGAATGGAACTGTAAATACTGGGTTAACAGTTGTGGGGGGCAATGGTGTTGCTGAAGGTGAAGAAAAAGTTCAGGACTTGAGGAATGAAACTGTAAATAATGGAATGGTTCTTGAGGGTGGAAATGGTTTTGCTGAAAGCGAAGAGGTTTTGGGCTCAAAGAAGGAAGTTATAAATAATGGAGTGGCAATTGCTGATGGGAATGTTGTTACTTACAGTGGAGAAGATCTGGGCTCAAAGGATGAAGCTGTAAACAATCAGTTGGCAATTGCAGATGGGAGTGGTGTTACTCCGGTTGAACATGATCGCTTGAAGAATGAAACTGTAGATCATGTAGAAGTACTTACAGATGGATTTGGTGTTGTAGAAGGGAAGTCTGGTGCAGTTGAATGTTTCCGAACATATAAGAGGCGCAAGCATGTAAAATGTGCTTCAGAATTTAAAGTTCAGGAAAACAGCAGAAAACATTTGGAAGTGGTAAGTTACCTGCTTGACCATGGTTCTGTATATCTATTTGTCATCACTCCGTACAAGATGTTTCATGTGTTATTTATGTCATTTTATAAAATTGTTACAGGTGACCGATCGAGATTGACCGAGCAGTTGGACGAATCAGAACAGGAGGACAGGACTGCTGGACCCAAGGGGAGAGGACTGACGAAGCCGAACGTGACAGGATGGTCTGAACCGAACGGCGAAGCACTGCAAGCTGCAAACCCAAGAGGACTGAAGGAACCAAAGGAAGCAAATGGTTCAGAAGTGAACAGAAGAGAACCGCCGACTCCAAACGTGAAAGGGCGGGAGGAATCGAACGATCTTACTTTGACATTCAAAGGCCGAACGGTTGAAGCAATTGATGACTCTGGCCTTGGTCCAGACATGACTTCAAGCACACTAAACAGTCCTGGTTCTTTCTGCAAAGTTGAAACTTCTAAAATTGACAATAATGGTCAAGAACGCTCTTTGGATTTAGATTGTTTGCTTTATCGATTACAGAGTGAAGCTAATGGGCAAGAAAATGCTGTGCATAATGGATTTTCTACTGAGCCTGATGGCCATGGTGCAACTGAAAGGTGTCAACGATTGTTCTGCGATATCTTAGCTTCTGAGGAGTTCAGTTCATTACGTAAAATACTGCTTGAAAATTTCCAAGAAATGAAACCTGAAACTATATTTGACTTTAGCCTGATAAACTCAAGGATGAAGGAACAAGCTTATGAGCAATCGCCTACACTTTTCTTATCTGATCTTCAACAGGTTTGGCAGAAGCTTCAAAATACTGGCCATCAGATTGTTGCTATAGCCAGGAGCCTCTCCAACTTGTCAAAAGCTTCCTTCTGTGAGCGGGTTGTGATTTCAGCGCACAGATCCTTCGAAGACGGAAAACAAGTGGAATCAATCTCTCACATGAAGCCGGATCAGAGACTAGAATGTGTCACATTCAAAATTGGCAGTTGCAGGCATTGTGGAGACAAAGCAGAAGGTGTAGACTGTTTGGTTTGTGATTCATGTGAAGAGATGTATCATCTGTCTTGTATTGAGCCTGCTGTAGAAGAAATACCCCCCAAAAGCTGGTTCTGTGCCAATTGTACTGCCAGCGGTATTGGATGTCAACATGAGAACTGTGTGGTGTGTGAACGGTTGAATGTCCCAAAGAAACTGGACGACATTGTGGGCAAGGAAGTCATCCCTACAAAAGAGGAAAAACTGAATGAATTGGAGGAGAATTCAATTTGTACTTGTGATGGGATTCCAGTTTCCGCAGGTCCGAGACATCTATCTGTCTGCAAAATTTGTAAAATAGTGGTGCAACGTGGAAAAATAAAAATCTGTGGTCACTTATTTTGCCCCAGTAAGTACTACCATGTAAGGTGTTTGTCTAGTAAGCAGCTTAGGACTTACGGTCACTGTTGGTATTGCCCTTCTTGTATATGCCAAGTCTGCTTCACTGACAAAGACGATGATAAGATTGTTCTCTGTGATGGCTGTGATCATGCATACCATATGTACTGTTTGAAACCTCCGCTAAATTTGATTCCTGTGGGGAAATGGTTCTGCATAAAATGTGATGCAGGGATACTAGCAATACGCAAGGCAAGAAAGGCATACGAGAGCAAGAAAGGGAAAATTGGTCAGAAGGATTTATTAAAGCCAAATGAAGACATTGATAAGAAATGGAACAGAAAACGTGAACGGGAATCTGATAAAGTTGGAGGAATGGAGATGCTTATAACTGCAGCAAATACTCTGAATTCTGAAGAGAAAATGAATGCAATCCAGATTGAGTCAGAGAGAACATTAACGTAA 2745 0.4244 WLETNLEEFWICFRGNPSFLSCVFGNWDSVEMQAEDGTSNGDKWAVLGRRSDSEDRDYEGRILGGNNIAGEEGRGLKDEALKDGVVVEGEEVRGLKKEAVDSRVSKGGNGITEGEEVRVLKREAINNGVTHEGGNGVANRKEVWGLKNGTVNTGLTVVGGNGVAEGEEKVQDLRNETVNNGMVLEGGNGFAESEEVLGSKKEVINNGVAIADGNVVTYSGEDLGSKDEAVNNQLAIADGSGVTPVEHDRLKNETVDHVEVLTDGFGVVEGKSGAVECFRTYKRRKHVKCASEFKVQENSRKHLEVVSYLLDHGSVYLFVITPYKMFHVLFMSFYKIVTGDRSRLTEQLDESEQEDRTAGPKGRGLTKPNVTGWSEPNGEALQAANPRGLKEPKEANGSEVNRREPPTPNVKGREESNDLTLTFKGRTVEAIDDSGLGPDMTSSTLNSPGSFCKVETSKIDNNGQERSLDLDCLLYRLQSEANGQENAVHNGFSTEPDGHGATERCQRLFCDILASEEFSSLRKILLENFQEMKPETIFDFSLINSRMKEQAYEQSPTLFLSDLQQVWQKLQNTGHQIVAIARSLSNLSKASFCERVVISAHRSFEDGKQVESISHMKPDQRLECVTFKIGSCRHCGDKAEGVDCLVCDSCEEMYHLSCIEPAVEEIPPKSWFCANCTASGIGCQHENCVVCERLNVPKKLDDIVGKEVIPTKEEKLNELEENSICTCDGIPVSAGPRHLSVCKICKIVVQRGKIKICGHLFCPSKYYHVRCLSSKQLRTYGHCWYCPSCICQVCFTDKDDDKIVLCDGCDHAYHMYCLKPPLNLIPVGKWFCIKCDAGILAIRKARKAYESKKGKIGQKDLLKPNEDIDKKWNRKRERESDKVGGMEMLITAANTLNSEEKMNAIQIESERTLT 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02380 914 ProSiteProfiles Zinc finger PHD-type profile. 629 679 IPR019787 -
Vimu1g02380 914 MobiDBLite consensus disorder prediction 344 361 - -
Vimu1g02380 914 Coils Coil 334 354 - -
Vimu1g02380 914 Gene3D - 514 679 - -
Vimu1g02380 914 FunFam PHD finger protein EHD3 isoform A 523 680 - -
Vimu1g02380 914 MobiDBLite consensus disorder prediction 392 411 - -
Vimu1g02380 914 Pfam PHD-finger 790 836 IPR019787 -
Vimu1g02380 914 Pfam PHD-finger 632 678 IPR019787 -
Vimu1g02380 914 ProSitePatterns Zinc finger PHD-type signature. 632 676 IPR019786 -
Vimu1g02380 914 CDD PHD_RSF1 791 835 - -
Vimu1g02380 914 ProSiteProfiles Zinc finger PHD-type profile. 788 838 IPR019787 -
Vimu1g02380 914 SUPERFAMILY FYVE/PHD zinc finger 617 677 IPR011011 -
Vimu1g02380 914 MobiDBLite consensus disorder prediction 344 416 - -
Vimu1g02380 914 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 733 839 IPR013083 -
Vimu1g02380 914 SUPERFAMILY FYVE/PHD zinc finger 790 838 IPR011011 -
Vimu1g02380 914 SMART PHD_3 741 790 IPR001965 -
Vimu1g02380 914 SMART PHD_3 631 677 IPR001965 -
Vimu1g02380 914 SMART PHD_3 793 836 IPR001965 -
Vimu1g02380 914 PANTHER OS02G0192300 PROTEIN 550 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02380 Vimu-Chr1 34428115 34441629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02380 790 853 C2H2 Transcription Factor Family AT3G01460 53.125 1.43e-15 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vimu1g02380 PHD 2.4e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02380 - - vun:114195482 900.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02380 1 34428115 34441629 Vimu1g02380 1 34428115 34441629 ECH
Vimu1g02380 1 34428115 34441629 Vimu10g02328 10 33946288 33958201 PCT