Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02375 GCGGTGGCATGGGAACCAGAGAAGCCATTGTCGATAGAGACCATAGAAGTGGCACCACCTGGGAAAGGAGAAGTTCGTTTGAAAATCCTCTTCAACTCCCTTTGCCGTACTGATGTTTACTGGTGGGATGTTAAGGGTCAGAATCCGCTGTTTCCTCGTATTTTAGGTCATGAAGCTTCGGGGATTGTGGAGAGCGTGGGTGAGGGTGTGACCGATCTGAAACCAGGAGATCATGCACTGCCAATATTCACTGGGGAGTGTGGGGAATGCAAATATTGCAAATCGGAAGAGAGCAACCTGTGTGAGCTGCTAAGGATCAACAGTGACAGAGGAGTTATGCTGAGTGATGGCAAAACAAGGTTCTCCAAAAATGGACAGCCCATTTACCACTTTCTGGGAACCTCTACATTCAGTGAATACACTGTTCTTCATGCTGGCTGTGTTGCCAAGATCAACCCTGCTGCCCCACTTGACAAAGTTTGCGTTGTCAGTTGCGGATTTTGCACAGGTTTTGGTGCTACTGTAAATGTTGCAAAACCAAAGCCTAATGATACTGTTGCTGTCTTTGGTTTGGGAGCTGTTGGTCTTTCTGCCTGTGAAGGAGCAAGGGTTTCTGGTGCATCGAGAATCATTGGGGTTGATTTACTCTCCAGTCGATTTGAACAAGCCAAAAAATTTGGGGTCACTGACTTTGTGAACCCCAAAGAGCACAACAAACCAGTTCAACAGGTAATTGCTGAAATGACTGGTGGAGGAGTAGATCGTGCTGTTGAATGCACTGGAAGCATCCAAGCTTCGATCTCAGCATTTGAATGCACTCATGATGGTTGGGGTGTTGCTGTACTTGTTAGTGTTCCTCACAAGGATGCTGAATTCAAAACTCATCCCATGAAGTTCATGGAAGGAAGAACTCTGAAGGGTACCTTCTATGGCCACTTCAAACCCCGCACTGATATTCCTGGTGTTGTGGAGAAGTACCTCAACAAGGAGCTGGAACTGGAGAAACTTATCACTCACAGTGTGCCATTCTCAGAGATCAACACGGCATTTGACCTTATGCTGAAAGGAGAGGGAATAAGGTGTCTGATCCGCATGGAAGAGTGA 1104 0.4674 AVAWEPEKPLSIETIEVAPPGKGEVRLKILFNSLCRTDVYWWDVKGQNPLFPRILGHEASGIVESVGEGVTDLKPGDHALPIFTGECGECKYCKSEESNLCELLRINSDRGVMLSDGKTRFSKNGQPIYHFLGTSTFSEYTVLHAGCVAKINPAAPLDKVCVVSCGFCTGFGATVNVAKPKPNDTVAVFGLGAVGLSACEGARVSGASRIIGVDLLSSRFEQAKKFGVTDFVNPKEHNKPVQQVIAEMTGGGVDRAVECTGSIQASISAFECTHDGWGVAVLVSVPHKDAEFKTHPMKFMEGRTLKGTFYGHFKPRTDIPGVVEKYLNKELELEKLITHSVPFSEINTAFDLMLKGEGIRCLIRMEE 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02375 367 FunFam Alcohol dehydrogenase 6 1 183 - -
Vimu1g02375 367 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 328 IPR036291 -
Vimu1g02375 367 CDD alcohol_DH_plants 1 364 - -
Vimu1g02375 367 PANTHER ALCOHOL DEHYDROGENASE 1 363 - -
Vimu1g02375 367 Gene3D - 7 357 - -
Vimu1g02375 367 FunFam Alcohol dehydrogenase class-P 170 308 - -
Vimu1g02375 367 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 56 70 IPR002328 GO:0008270|GO:0016491
Vimu1g02375 367 Pfam Zinc-binding dehydrogenase 193 321 IPR013149 -
Vimu1g02375 367 Gene3D - 170 308 - -
Vimu1g02375 367 SUPERFAMILY GroES-like 315 364 IPR011032 -
Vimu1g02375 367 SUPERFAMILY GroES-like 1 174 IPR011032 -
Vimu1g02375 367 Pfam Alcohol dehydrogenase GroES-like domain 23 150 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02375 Vimu-Chr1 34401141 34404316 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02375 3 357 Monolignol Biosynthesis Gene Families AT1G72680 25.000 7.76e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02375 K18857 - gmx:100775490 686.026