Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02370 ATGACTGAAGGTTTCAAAGAGAAATTAGGCAAAGTTGCGGGACCTTCCGTGGCAATCAAAATGTTAGGCAAATCTAAAGGAAATGGACAAGATTTTATCAATGAAGTTGCAACCATTGGAAGAATACATCATCAAAATGTGGTACAATTAATTGGATTTTGTGTCAGTGGTTCAAAGCGTGCTCTTGTTTATGAATTCATGCCCAATGGATCTCTTGATAAATTTATATTTTCAAGAGATGGAAATACAGATTTTAGCTATGAAAAAATATACAAGATATCGATTGGAGTAGCTCGTGGAATTGCCTATCTCCATCATGGATGTGAGATGCAGATTTTGCATTTTGATATCAAACCCCATAACATCTTATTGGATGAGAATTTCATTCCAAAGATTTCTGACTTTGGATTAGCAAAGTTATATCCAATAGATAATAGCTTCGTCACAATGACAGCAGTAAGAGGAACCATTGGATATATGGCTCCAGAATTGTTTTACAATAATATTGGAGGAATATCCCACAAAGCTGATGTTTATAGCTTCGGAATGTTGTTGATGGAGATGGCAAGCAAGAGGAAGAATCTAAATCTCCATGCAGAACACTCAAGTCAGCTTTACTTTCCCCTTTGGATATATAATCATATTAGAGAAGAGGAAGATATAGATATAAAGGATTTGAGCGAAGAGGAAAAGCTAATAATAAAGAAAATGATCATAGTTGCACTTTGGTGTATACAGTTAAAACCAAAGGATCGTCCTTCAATGAATAAAGTAGTGGAAATGCTTGAAGGAAACATTGAAGATTTGGAAATACCTCCAAAACCTACTTTATTTCCTGATGATGAAATGAGTGTAGAGGATCAAACTGCCAGTTCTATCTAA 882 0.3492 MTEGFKEKLGKVAGPSVAIKMLGKSKGNGQDFINEVATIGRIHHQNVVQLIGFCVSGSKRALVYEFMPNGSLDKFIFSRDGNTDFSYEKIYKISIGVARGIAYLHHGCEMQILHFDIKPHNILLDENFIPKISDFGLAKLYPIDNSFVTMTAVRGTIGYMAPELFYNNIGGISHKADVYSFGMLLMEMASKRKNLNLHAEHSSQLYFPLWIYNHIREEEDIDIKDLSEEEKLIIKKMIIVALWCIQLKPKDRPSMNKVVEMLEGNIEDLEIPPKPTLFPDDEMSVEDQTASSI 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02370 293 SUPERFAMILY Protein kinase-like (PK-like) 13 263 IPR011009 -
Vimu1g02370 293 ProSiteProfiles Protein kinase domain profile. 1 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02370 293 ProSitePatterns Serine/Threonine protein kinases active-site signature. 112 124 IPR008271 GO:0004672|GO:0006468
Vimu1g02370 293 PANTHER RUST RESISTANCE KINASE LR10-RELATED 8 283 IPR045874 GO:0004672
Vimu1g02370 293 Gene3D Phosphorylase Kinase; domain 1 5 70 - -
Vimu1g02370 293 FunFam PR5-like receptor kinase 67 274 - -
Vimu1g02370 293 SMART serkin_6 3 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02370 293 Pfam Protein kinase domain 14 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02370 293 Gene3D Transferase(Phosphotransferase) domain 1 71 271 - -
Vimu1g02370 293 PIRSF ILK 2 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02370 Vimu-Chr1 34281143 34282053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02370 5 293 Receptor kinase-like Gene Family AT4G18250 50.000 1.69e-99 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu1g02370 Pkinase 4.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02370 - - vum:124829708 528.865