Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02364 ATGGATCAACACCACTTCCTCCACCACCACTACCACCACCCTCAGGACCACCGCACCACCCGCTACGCTTCCATCAACCCTCAATCGCATCACAACCACCACCACCATAACAACCTCCCACCGCCGCCGCCAGCGCCGCCACCGCCTCTCTCCTACCACCGCAGCCTCCACCCGGCTCCCCTGCCGCAACCCTACACCCCTTCCACTCCCCAACCCCAACAACAGCAGCAGCAGCAGCAGCAATTCTCTTTCAATCACCACTCATCTCTCCCACACCGCACCCTCGAAGAAGATTCACGTTCTCTCCCCTACGACCTCCTCCCTCGCCGGACCACCGCCATCCCCTGGAACCCTAACCCTAGAACTGACGATTTCGATCGCGAATTCCACCACCACCACCACCGCCCTCCCCCGCCGCCGCCTCCCCCGATCGAAACCCTCCGCTACGACCCCGGGCGCCGTGACCGCCTCGTAGTGGATGCCTACGAGCAAAACCCCAGGGAGGCACTCTCTTGGGGCGGCGGTGACTACCACGCGCCTAGCCAGGGCGACGTAGAGCCCTCGCCCTACGTTCGAGTGTACAGCGTGGAATGTGACGCTGACGTGGCCGGTAGAGGGTCCCGGGTGGAGAGCAAGAGGTGGGTGATGAGTGATAGAGAGAGGGAGAGGGGAAGAGAGTTGCACGAGTCTTCTTCTAATTTAGTTAGCAAGGTTAGTAACACTGACAAATATTATCATGGTTCTGATAATGTGGGTAGGTATAATAGAGGGAATAGTAGAGAGCGTAGTCATGAATTCGCACGTACTCCTCCTAAGAAACAGATGCAGAAGAAAAGCGCGCTTCTTAGGATTCAGACTGCTAAACCTAATCATAGGAACCGTGAGGTTGAGCAGTTACGGTACCCCAGTTATGGACCTGAAGGTAGCAATGGCTTTTTCAGGGCTAAGGAACAATATTTGGTTCATGGGGTGAAGGGGGAAGAGAGAGAAGGGAGCCCTGTTGAGATTGATATCTCTTTCGAGTCCAATTCTCTGGTGGCCAAGGCTATTGTTGCGCCGCCTTCGAGTTCAGTGTCTGTTCCTGATTTGAATGTGACGCCGGTTTTGGATTCGGATTTGGGTTCTGGGGAGAAGAATAAAAGGGTTTCGGGTTCTGATGGCTATTACTCTGGTTTGCATCAGCCGTATAGAGTGTCTTCCGTTGTGGTTGTGGATTTAAATAGGTCGCCTTGCAAGCGTAATGATAGGTCTGGTTTGGGGAAGGAGGTTAAAGTGCGGAAGAGTGTTCAGGATAGTTCTTCTCGGTCTCGTACCAGGGAGGCTGAAGATTCTCGTGGGCAAAATGCGGTGCCAAATTCAGTTAAAGCTGGCAATGTCTGTTCTGGTAAATCGACCATAACGGTTGTCAAGAAGAAGAAAATTGTTAAGAGATTGGTGAAGAAAGCTAGTGCAAACTCTAAGACGTCTGTGCCAAATTCACTGCAAAAAAGGCTTCCTGGAACTGTGAAAGTCGAGAGTGCTGCACTGATTTCGTCAACGGCCTCTATTCCTGAGAAAATTCAAGCTAATTCAGATGACAAAATCAACATCGTTGATGAAGTGCCAGACTGTTTACATTCTTTGCCAAAGGAAGGTAATGTATTGAAAGAAGATAAAGAGGGAGGTTTACTGCAGCTGAGTTTGGGGCCAGATTACACATCGCAAGAGTGTGACAAAGATTCTGATAATAGGGAACTGTCCAGGTTTGAAATTGAAAGAGATGGAAACATTCCAAAATTTTCTTCTCGTGCTTCTAGTAGTGAAGATAAGAAGAGTGATTCAGATTGTTTAGATGTTAATAATGATGTCCTTAATAATGGAAATATTATTTTTATGCATGATAATGCAAATACTTCCGATTGTTTAGCTGCAAATAATTCTGTTCCAGGTACTATTTCTGAAGTCAATCACATGGATTATGATAATAAGCAATTATGTCAGAATGAAGGGTCTCTATCGGTTGGGAATTATTCAAATGTACAATCCCCACTGAATAACAATCTTGTAGATGCAGGGGATGAGATATTAAAAACCAGCGGTACTTTTTCAAGTTCAAGAAAAATTGGGATTCAAGATGGTCTAGATTGCCTACAACATGCCAGTGCACTGAAGCAAGGCTCTGATGATGGATCATCTAATTTAGAAGATTGTATTATTGTTCACGGATCTGGTATCATGAATGAGGCTGGAAACCAATTGGCCCATGGTGATGTCACCATGCACCCTGAGAATTGTGAGACAGGAAAAACATTCCCAAATTCTATTATTTTAGCTGGATCTGGTGAAGGGAACACAAAGAAGATAAAAAAGAGAAAAGCTAGAACACAATTTAATATTTTGAGTTCAGAGATGGAATTATCTCCAGATCATGTAAATCCTGATAACCTTGCAAATAATGTGGACGGAGGTACAGTTCTATTGTCGAAAGATCCATCTGCTTCTAAAGTTTTAGATCAGTCTGTTCAAAACGATGTTGAATCAATAACTGGTTTGGATGAGGTTACTGCTTTACATGAGGAAGGGGAGTTTTTAGAGACTCGGTTTTATGCTTCAAATAACAACAATGGTGATGCAAATGAGGTTTCACCATCTTCTAAAAGGAAAAAAGTTACAGCTAACCCAAATTTTACTCAATGTCAATCGCAAATCAGTGCTGTTATTATGGTTACCACCACATCTGATGTTAAAGCTCCTGTCAATCTCAATGATAACCAAGAACATCAGAAAGAATTTGCGTTGTCAAGCATGGGTATGTGTGTACCGACTTCTGTTCAGTCAATGCCTTCTGTTCAGTCAATGCCTTATTCAGAGAGTATTACTAAAATGTCTGACAATATTTTGAGTGGAGGATCTTTTGACTCTACTGATGCAAATAGGGAAACCATGAGTTCCGAGTATTCTGAATTACAACACTCAGATATAGTCTCTTTTTCACCATGTGAGAACTTAGCATTTCAAAACAATCAATTCTCACCATTGGAAGGTGAGTGCATAGAAAACATTACTCCAGTTGTGCTTGTGAGTAATACTCAAATTGATGTTTTAGGTGTTGGAAATACAATGGGAGAAAAGACTGATTTACAGGCCGTTAAGGAACATTATCAATATAGAGAATTTGTGCAAAGGTCACCAAGAGCTGACATGGAACCTAATGATCTCAATGTTAAGAATGATTTGCTTGCTCAGCAGAACCTTATGTCCTGTCCAACTAGTGGTGATGAAGTCACTACAAGTAATTCGAATGATGAATTCACTGTGGATGCTCCTGGTGCATTATCAGATATATTTTCTCAAGGGATGGCATCTGAAGTACCGGATAAAAGGATTTTAGAATTGACAGCTATCAATGATGAAAATATTTGTGGGGTTGAAGAAAATACTTCATCAGTACATCAGACGAAACAGAATAGTAAGTCAGACAGTGCATTTGGACACAGTAATATGATAACAAAGAAAACAATTTCAGAACCATCCCAAGTTTCTTCCAAAGTTATAACTCAGGCTCTAAATTCATATCGCTTTGGGTCGAGTGGGACCAAAAATCAGTCAGGTAGTGTCATTCCCAAAACTTTTCCAGGTCATTCTTTTACCTTTTTGAAGTCTGAGACAAAGACATCTGCCTCTTCAACTCATGTGTCAAAGCCTCGAACTTGGCATCGGACAGGTAATAATCCCCCTATTTCTCTACCTAGAATCAATTCAGTAAGAGCAGTTCCTCCCAAAAGGCCAATTCTAGAAAGGAAAGGGAACTTTCAAAATACCTCGTATGTTCGTAATGGAAACAGTCTTGTAAGGAAACCTACTCCAGTTCCTGCTTTACCTCAAATCTCCTCTGTAAATAAGTCATCTTCGGGCTTTGGTGAAATATCAAAAAGCACTAAATCTGAAAGCAGGGCTGACGTGACAGATCAACCAATGTACCTGAGAGCAGGAGCAAGATTTTCTCAGCAGAGGCAGAGACAGAGAACACCTCCACTACCAATTGACACCAAATCAGAGGAAAATACATCTTCCTCATTGGTAGAACCTCATTCTGGTGGTTCCTGTGAAAATGTATCTGATCCTAAAACATTTATAGAAATTAATAATAATGCACAGAACTCTTCTGAAGATGCACTGAAGCATTGTGAAATTCCAGAAAACCAACATGTTCCATCCGATAATGGGGAGAGTCAAGTTGAAGCAAACGAAGGCAATCCCCTTTCTTTGAATACGAAGAGAATAGTATATATAAAGCCCAAAACAAATCAATTGGTTGCAACATCAAATTCGTGTGATGTTTCTCTCTCCACTGATGACAATGGCCAAACTGCCTTCTCTGATGGCTACTACAAGAGAAGAAAAAATCAGTTGGTTAGGACTACATTTGAAAGCCATTCCAACCAGACTGCTGCAGTGCCTAATGGCACAGCAAATTCTGATGGACAAGGAACTAGTAATGCTCTTTGCAATACGAGGTTTAGTAAGAAGCGGTTACATAAGGCTGGCCATGGGTTTAAATTTGGAAACAGCCTCTTTGCATATGCAAGGCTATGTTTGCTTACATTGACCCTTCCTCATACCTTTACACTCAAAAATTCTTCTGAAAATGACAAGAATTCACGTCATAATCAAAAGGTTTTGCCTCAATTGTTTCGATGGAAAAGAGCAACATTTGTTTCAAGTTTCAATAGTAGTTCCGTATCTGCAATCAGCAAAAAATTGCTTCAATTGAGAAAGAGGGATACTGTTTACACTAGGTCAAAACACGGGTTTTCACTTTGGAAATCCCGAGTTTTAGGTGTTGGTGGTTGTAGTCTGAAATGGTCCAAATCCATTGAGAAGAACTCAAAGCAAGCTAACGAGGAAGCTACACTTGCTGTTGCTGCTGTAGAGAGGAAGAAGAGAGAGCAGAATAATGTGGTTTGCATCAGTTCTCAGTCAAAGAGTAGGAAGCATTCTTTCCATGAGTGTTCGTCATATCATAGTGCCGACAACTCTGTTTTTGAGAGCGAATATTTCGTATTGGTTCAGTTCGATACAGAATGGATCCCACCAGGAGGACACTCCAGAGGATTTCAGATTATCTGTTTGGACAAGGAGGAGGTGGGGCATCAGATTCTGAAATCTTTTGTTGCCTGCCATGTTGCATCCAGAACTGTGGCTTCTTCTGATGAATCCCAGTCCTCCTCGGCGTCTACCAGTTCAGGTTTGGCCTCCAAAAGTGCTTACATTCCAAGGAGATTAGTGATTGGAAACGATGAATATGTACGAATTGGAAATGGTAACCAGCTTATCAGAGACCCAAAGAAACGAACTCGAAAATTGGCAAATGAAAAAGTTAGATGGAGCTTGCACACTGCCAGACAGCGGTTGGCTCGAAAGCAGAAGTATTGTCAGTTTTTTACCAGATTTGGGAAATGTAAAAAGGATGGAGGGAAGTGTCCTTATATTCATGATCCTTCAAAAATTGCTGTCTGTACTAAGTTCCTGAATGGTTTATGTTCTACTCCCAACTGCAAATTAACGCACCAGGTTATTCCGGAGAGAATGCCAGATTGTTCTTATTTTTTGCAAGGCTTATGCTCAAACAGTAATTGTCCATATAGACATGTCAATGTGAACCCCAATGCATCGATTTGTGAAGGATTTCTTAGGGGATATTGTGCTGATGGGAATGAGTGTCGGAAGAAGCACAGCTATGTCTGTCCTACTTTTGAAGCAACGGGAACCTGTACTGAAGGATCCAAATGCAAACTCCATCACCCCAAAAAACAAAGCAAGGGAAAGAAAAGGAAGAGATCTGGAGATCATAAAAACACCAGAGGGCGCTATTTTGGTTTTATTCCTGCTGATGTTTCTGAATCTGGGATGATGGTTGCTCCAAACCGACATAAACAAAGTAGTGAAATTAAAGAGGAACTGTCTGACTACATCAGCCTTGATGTTGTCAGTGAAGAAGTCGCAGACACTGATGATCTATCATTTGATCCAGCAGTGTTCTGTGAGAATGATTCCTTGGATGATCTTGATGAACTCATTAAACCAGTTCTTCTACTGAAAACAAAGTTCACATCACAATCACCTAATTCACATATCCTCCACGCAACTGGCGGAGACTTCGGTCGTTTGTTAATGAGGTAA 6162 0.4263 MDQHHFLHHHYHHPQDHRTTRYASINPQSHHNHHHHNNLPPPPPAPPPPLSYHRSLHPAPLPQPYTPSTPQPQQQQQQQQQFSFNHHSSLPHRTLEEDSRSLPYDLLPRRTTAIPWNPNPRTDDFDREFHHHHHRPPPPPPPPIETLRYDPGRRDRLVVDAYEQNPREALSWGGGDYHAPSQGDVEPSPYVRVYSVECDADVAGRGSRVESKRWVMSDRERERGRELHESSSNLVSKVSNTDKYYHGSDNVGRYNRGNSRERSHEFARTPPKKQMQKKSALLRIQTAKPNHRNREVEQLRYPSYGPEGSNGFFRAKEQYLVHGVKGEEREGSPVEIDISFESNSLVAKAIVAPPSSSVSVPDLNVTPVLDSDLGSGEKNKRVSGSDGYYSGLHQPYRVSSVVVVDLNRSPCKRNDRSGLGKEVKVRKSVQDSSSRSRTREAEDSRGQNAVPNSVKAGNVCSGKSTITVVKKKKIVKRLVKKASANSKTSVPNSLQKRLPGTVKVESAALISSTASIPEKIQANSDDKINIVDEVPDCLHSLPKEGNVLKEDKEGGLLQLSLGPDYTSQECDKDSDNRELSRFEIERDGNIPKFSSRASSSEDKKSDSDCLDVNNDVLNNGNIIFMHDNANTSDCLAANNSVPGTISEVNHMDYDNKQLCQNEGSLSVGNYSNVQSPLNNNLVDAGDEILKTSGTFSSSRKIGIQDGLDCLQHASALKQGSDDGSSNLEDCIIVHGSGIMNEAGNQLAHGDVTMHPENCETGKTFPNSIILAGSGEGNTKKIKKRKARTQFNILSSEMELSPDHVNPDNLANNVDGGTVLLSKDPSASKVLDQSVQNDVESITGLDEVTALHEEGEFLETRFYASNNNNGDANEVSPSSKRKKVTANPNFTQCQSQISAVIMVTTTSDVKAPVNLNDNQEHQKEFALSSMGMCVPTSVQSMPSVQSMPYSESITKMSDNILSGGSFDSTDANRETMSSEYSELQHSDIVSFSPCENLAFQNNQFSPLEGECIENITPVVLVSNTQIDVLGVGNTMGEKTDLQAVKEHYQYREFVQRSPRADMEPNDLNVKNDLLAQQNLMSCPTSGDEVTTSNSNDEFTVDAPGALSDIFSQGMASEVPDKRILELTAINDENICGVEENTSSVHQTKQNSKSDSAFGHSNMITKKTISEPSQVSSKVITQALNSYRFGSSGTKNQSGSVIPKTFPGHSFTFLKSETKTSASSTHVSKPRTWHRTGNNPPISLPRINSVRAVPPKRPILERKGNFQNTSYVRNGNSLVRKPTPVPALPQISSVNKSSSGFGEISKSTKSESRADVTDQPMYLRAGARFSQQRQRQRTPPLPIDTKSEENTSSSLVEPHSGGSCENVSDPKTFIEINNNAQNSSEDALKHCEIPENQHVPSDNGESQVEANEGNPLSLNTKRIVYIKPKTNQLVATSNSCDVSLSTDDNGQTAFSDGYYKRRKNQLVRTTFESHSNQTAAVPNGTANSDGQGTSNALCNTRFSKKRLHKAGHGFKFGNSLFAYARLCLLTLTLPHTFTLKNSSENDKNSRHNQKVLPQLFRWKRATFVSSFNSSSVSAISKKLLQLRKRDTVYTRSKHGFSLWKSRVLGVGGCSLKWSKSIEKNSKQANEEATLAVAAVERKKREQNNVVCISSQSKSRKHSFHECSSYHSADNSVFESEYFVLVQFDTEWIPPGGHSRGFQIICLDKEEVGHQILKSFVACHVASRTVASSDESQSSSASTSSGLASKSAYIPRRLVIGNDEYVRIGNGNQLIRDPKKRTRKLANEKVRWSLHTARQRLARKQKYCQFFTRFGKCKKDGGKCPYIHDPSKIAVCTKFLNGLCSTPNCKLTHQVIPERMPDCSYFLQGLCSNSNCPYRHVNVNPNASICEGFLRGYCADGNECRKKHSYVCPTFEATGTCTEGSKCKLHHPKKQSKGKKRKRSGDHKNTRGRYFGFIPADVSESGMMVAPNRHKQSSEIKEELSDYISLDVVSEEVADTDDLSFDPAVFCENDSLDDLDELIKPVLLLKTKFTSQSPNSHILHATGGDFGRLLMR 2053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02364 2053 PANTHER CCCH ZINGC FINGER 262 2027 - -
Vimu1g02364 2053 MobiDBLite consensus disorder prediction 110 149 - -
Vimu1g02364 2053 MobiDBLite consensus disorder prediction 255 272 - -
Vimu1g02364 2053 MobiDBLite consensus disorder prediction 121 135 - -
Vimu1g02364 2053 MobiDBLite consensus disorder prediction 1217 1242 - -
Vimu1g02364 2053 ProSiteProfiles Zinc finger C3H1-type profile. 1881 1908 IPR000571 GO:0046872
Vimu1g02364 2053 MobiDBLite consensus disorder prediction 356 389 - -
Vimu1g02364 2053 FunFam zinc finger CCCH domain-containing protein 3 1829 1880 - -
Vimu1g02364 2053 MobiDBLite consensus disorder prediction 1272 1364 - -
Vimu1g02364 2053 MobiDBLite consensus disorder prediction 241 278 - -
Vimu1g02364 2053 MobiDBLite consensus disorder prediction 410 456 - -
Vimu1g02364 2053 Gene3D - 1881 1944 - -
Vimu1g02364 2053 ProSiteProfiles Zinc finger C3H1-type profile. 1799 1828 IPR000571 GO:0046872
Vimu1g02364 2053 FunFam Zinc finger CCCH domain-containing protein 7 1882 1943 - -
Vimu1g02364 2053 MobiDBLite consensus disorder prediction 38 69 - -
Vimu1g02364 2053 MobiDBLite consensus disorder prediction 1927 1945 - -
Vimu1g02364 2053 Coils Coil 1627 1647 - -
Vimu1g02364 2053 MobiDBLite consensus disorder prediction 410 444 - -
Vimu1g02364 2053 MobiDBLite consensus disorder prediction 1471 1490 - -
Vimu1g02364 2053 MobiDBLite consensus disorder prediction 1286 1305 - -
Vimu1g02364 2053 ProSiteProfiles Zinc finger C3H1-type profile. 1854 1880 IPR000571 GO:0046872
Vimu1g02364 2053 MobiDBLite consensus disorder prediction 1919 1949 - -
Vimu1g02364 2053 SMART c3hfinal6 1799 1827 IPR000571 GO:0046872
Vimu1g02364 2053 SMART c3hfinal6 1828 1852 IPR000571 GO:0046872
Vimu1g02364 2053 SMART c3hfinal6 1881 1907 IPR000571 GO:0046872
Vimu1g02364 2053 SMART c3hfinal6 1854 1879 IPR000571 GO:0046872
Vimu1g02364 2053 SMART c3hfinal6 1908 1930 IPR000571 GO:0046872
Vimu1g02364 2053 MobiDBLite consensus disorder prediction 1327 1364 - -
Vimu1g02364 2053 Gene3D - 1826 1880 - -
Vimu1g02364 2053 MobiDBLite consensus disorder prediction 26 83 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu1g02364 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02364 - - vun:114193719 3317.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02364 1 34234401 34243638 Vimu1g02364 1 34234401 34243638 ECH