Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02363 ATGAAAATGCTGCCAACTTCCACCGCCGGAGAGGCCAGCCAAGGTGGCCGGACGGTGGTAGTTGGAGTGAAGATGGACTCCCACAGCACCGAGTTGCTCACTTGGGCTTTGTTCAAAGTGGCTCAGCCCTGTGATGTTGTGCTTGCTCTTCATGTTCTTGGGAATGATGAAATTGTTAATCGGGATGGGAAATCGTCTTTATTTTCACTTGTCAAAGCGTTTGACTCTGTGCTTGCCGTTTACGAAGGGTTCTGCAATTTGAAACAGGTGGATCTTAAGTTCAAAATATGTCGGGGTTCATCAGTGAGGAGAATTCTGGTTCGAGAAGCAAATGCTTATTCTGCAACGCACATCATAGTCGGAAGTCCTCAAGGTCTTCACAGAATTCGGCCATGTATATCTGTGGCAAGGTACTGTGCTAAGAAGCTACCAAGGGATTGTTGGGTTCTTGCTGTTAATAATGGGAAAATTGTGTTCAAGAGGGATGGATCACCAGCAACTGCAGCTGACATGAAAGGAGTTGATCAGAACCACGCAACTGGGGTGCTTAGTTCATTTCACAGGACAATTGGCAATACTTCAAAAGTGCTAGATGATGATGGTACCGCGATGCAGGGAAAGGGTAGTGGTCAATTTTCAGATCACAGTTTGGCTAAGGCTTTCCGGGAATCTAAAGAATTCATTGAGAAGAAGAGTTGCTCTGTTTGTTCTTCAAACCCAGCACTTTTTGGTTTATATTGTGACCATTCAGAAGAAGAGTCTTGTGGTGATGCTTGTGATGAGAACCCTTTGGCAATAGTGTCTGTGCAGACCAATGATTCTAATTCTAAACCAGGTTGGCCTTTGCTTCATAGGACAATTGTATCTGACAGGAAATGTTCTGAAAGATCGATGTTTCGCCAGATCTCTGTGGTACAATGGGCAATGCAATTACCTTCTAGAAATCTTTCATATGCTGCACATCTTGACCAAAAAGCAAACAATTGTGGCCCAAATAAGGATCAGTTTTTGGGTCTGGATAGCAAGAGTGGTGCTCTTGTTCCAGTGGATACTGAATTAGGGACTGCCTCTGTGCCTGAACACAACCCCAGAAGCATTCCTAAGGAATTGGAGGGCCTTCATGAGAGATACTCATCCAGTTGCAGATTGTTTAAGTACCAAGAACTTGTACTTGCAACATCAAATTTCTTGCCAGAAAATTTGATTGGGAAAGGAGGAAGTAGCCAGGTATACAGAGGCTGCCTTCCTGATGGCAAGGAACTAGCTGTTAAGATCTTAAAGCCATCTGACGATGTTCTGAAGGAGTTTGTTCTAGAAATAGAAATTATCACTACCTTGCATCACAAAAACATTATTTCCCTCCTTGGATTCTGCTTTGAGGATGGTAATCTTCTTTTGGTCTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAACATCCATGGTAATAAGAATAATCCACTTGTGTTTGGTTGGACTGAGAGATACAAGGTGGCCATGGGTGTTGCTGAGGCTTTGGAGTATCTACATAATAATGAAGGTCAATCTGTGATCCATCGCGATGTAAAATCATCAAATGTTTTGTTATCTGAGGATTTTGAACCCCAGCTCTCTGACTTTGGACTTGCAAAATGGGCATCAACTTCATCATCACATATAATCTGCACAGATGTTGCTGGAACCTTTGGTTACATGGCTCCTGAGTACTTCATGTATGGCAAAGTAAATGACAAGATTGATGTCTATGCATTTGGTGTTGTGCTTCTTGAACTCCTTTCAGGGAGAAAGCCCATAAGTAGTGATTATCCAAAAGGTCAAGAGAGCCTTGTCATGTGGGCAAATCCAATTCTAAACAGCGGGAAGGTGTTACAATTGTTAGATCCTAGTTTGGGTGATAACTATGATCCTGAAGAGATGGAAAGGATGGTCTTGGCAGCTACACTTTGTATCAGACGTGCTCCAAGAGCTAGACCTCAAATGAGCCTTATCAAAAAGCTCCTTGGAGGTGATGGTGAAGTGATGAAGTGGGCAAGACTAGAAGTGAATGCTGTGGAAGCAGCAGAAATGGCTGATGATGAAGCTTGTCTTCCTTCTTCCAATCTGCAGTCACACCTTAACCTTGCTCTGCGTGATGTGGAGGATGACTCACTCTCCATTTGCAGTGTTGAGCAAAACATCTCATTGGAGGACTACTTGAGAGGCAGGTGGAGCCGTTCATCAAGCTTTGATTGA 2232 0.4332 MKMLPTSTAGEASQGGRTVVVGVKMDSHSTELLTWALFKVAQPCDVVLALHVLGNDEIVNRDGKSSLFSLVKAFDSVLAVYEGFCNLKQVDLKFKICRGSSVRRILVREANAYSATHIIVGSPQGLHRIRPCISVARYCAKKLPRDCWVLAVNNGKIVFKRDGSPATAADMKGVDQNHATGVLSSFHRTIGNTSKVLDDDGTAMQGKGSGQFSDHSLAKAFRESKEFIEKKSCSVCSSNPALFGLYCDHSEEESCGDACDENPLAIVSVQTNDSNSKPGWPLLHRTIVSDRKCSERSMFRQISVVQWAMQLPSRNLSYAAHLDQKANNCGPNKDQFLGLDSKSGALVPVDTELGTASVPEHNPRSIPKELEGLHERYSSSCRLFKYQELVLATSNFLPENLIGKGGSSQVYRGCLPDGKELAVKILKPSDDVLKEFVLEIEIITTLHHKNIISLLGFCFEDGNLLLVYDFLSRGSLEENIHGNKNNPLVFGWTERYKVAMGVAEALEYLHNNEGQSVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASTSSSHIICTDVAGTFGYMAPEYFMYGKVNDKIDVYAFGVVLLELLSGRKPISSDYPKGQESLVMWANPILNSGKVLQLLDPSLGDNYDPEEMERMVLAATLCIRRAPRARPQMSLIKKLLGGDGEVMKWARLEVNAVEAAEMADDEACLPSSNLQSHLNLALRDVEDDSLSICSVEQNISLEDYLRGRWSRSSSFD 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02363 743 Gene3D Phosphorylase Kinase; domain 1 364 470 - -
Vimu1g02363 743 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 16 153 - -
Vimu1g02363 743 SUPERFAMILY Protein kinase-like (PK-like) 376 667 IPR011009 -
Vimu1g02363 743 FunFam Putative receptor-like serine/threonine-protein kinase 471 683 - -
Vimu1g02363 743 ProSitePatterns Serine/Threonine protein kinases active-site signature. 517 529 IPR008271 GO:0004672|GO:0006468
Vimu1g02363 743 ProSitePatterns Protein kinases ATP-binding region signature. 402 424 IPR017441 GO:0005524
Vimu1g02363 743 Gene3D Transferase(Phosphotransferase) domain 1 471 676 - -
Vimu1g02363 743 Pfam Protein kinase domain 400 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02363 743 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 149 - -
Vimu1g02363 743 CDD USP_Like 18 149 - -
Vimu1g02363 743 Gene3D HUPs 16 153 IPR014729 -
Vimu1g02363 743 PANTHER OS08G0249100 PROTEIN 239 678 IPR046958 -
Vimu1g02363 743 SMART serkin_6 396 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02363 743 CDD STKc_IRAK 402 661 - -
Vimu1g02363 743 ProSiteProfiles Protein kinase domain profile. 396 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02363 743 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 365 470 - -
Vimu1g02363 743 Pfam Universal stress protein family 17 149 IPR006016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02363 Vimu-Chr1 34204626 34208075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02363 383 666 Trihelix Transcription Factor Family AT1G68690 46.021 2.52e-77 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vimu1g02363 Pkinase 1.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02363 - - gmx:100305405 1082.78