Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02359 ATGGGGAGGGGAAAGATTGAGATCAAGAGGATCGAGAACTCCAGCAACAGACAAGTTACCTACTCCAAGAGAAAGAATGGGATCCTAAAGAAGGCCAAGGAAATCACTGTTCTATGTGATGCACAAGTTTCCCTTATCATCTTTGCTGCATCTGGGAAGATGCATGACTACATCAGCCCTTCCACCACTTTGATTGACATATTGGAGAGGTACCACAAGACCTCAGGGAAGAGGCTTTGGGACGCCAAGCATGAGAACCTAAACGGCGAAATTGAGAGACTCAAGAAAGAGAATGACAGCATGCAAATTGAGCTCAGGCACTTGAAGGGGGAAGATATAAACTCTCTGAATTACAAGGAACTCATGGCCTTAGAAGATGCCTTGGAAACTGGTCTCGACAAGATCTTGGAGGAGGAGAACAGGGAACTTAATTTTCTCTGGCAACAACGTTTGGCAGTGGAAGGTGCAAGAGAAGTGGAGAACGGGTTTGATCAGAGTGTGAGGGATTACAATTCCCATATGCCATTTGCCTTTCGTGTGCAGCCAATGCAGCCAAATCTTCAAGAAAGGATCTGA 576 0.4566 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHDYISPSTTLIDILERYHKTSGKRLWDAKHENLNGEIERLKKENDSMQIELRHLKGEDINSLNYKELMALEDALETGLDKILEEENRELNFLWQQRLAVEGAREVENGFDQSVRDYNSHMPFAFRVQPMQPNLQERI 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02359 191 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vimu1g02359 191 Pfam K-box region 82 139 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu1g02359 191 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Vimu1g02359 191 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vimu1g02359 191 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
Vimu1g02359 191 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vimu1g02359 191 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vimu1g02359 191 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vimu1g02359 191 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vimu1g02359 191 Coils Coil 77 111 - -
Vimu1g02359 191 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vimu1g02359 191 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 182 - -
Vimu1g02359 191 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Vimu1g02359 191 ProSiteProfiles K-box domain profile. 84 184 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02359 Vimu-Chr1 34127847 34131916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02359 1 135 MADS-box Gene Family AT5G20240 71.852 3.75e-68 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vimu1g02359 K-box 5.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02359 K09264 - gmx:100817554 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02359 1 34127847 34131916 Vimu1g02359 1 34127847 34131916 ECH
Vimu1g02359 1 34127847 34131916 Vimu10g02317 10 33832550 33833149 PCT