Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02352 ATGAAGTCTCCAACCGCTATTGTAGGTTCGATCTTTTTGGGGCTGGCGGTCACTGCTGTCTTTATGAGCATTCTCTATTTTAGGGAAAAACAAGAAGATCAAGCAAGAGTGGACAAGTTTTTGGAGGACTACAGGGCAGAAAAGCCTGCAAGATTCACCTACGCCGACCTTAAAAGAATCACCAATGGCTTTAAGGAAATGTTAGGAGAAGGAGCTCATGGGGCTGTGTTCAGAGGAAAGCTTTCCAGTGAGATACCCGTGGCTGTGAAGATCCTCAACAATACAGAGGGAGAAGGGAATGAGTTCATCAATGAAGTGGGAATTATGGGCAAAATCCATCACATCAACGTGGTGCGCTTGCTTGGCTTCTGTGCAGAAGGACTCCATCGTGCTCTTGTCTACAATTTCTTTCCAAACGGTTCTTTACAAAGCTTCATATTTCCACCAGAAGACAAGGACCGTTTCCTTGGCTGGGAGAAGCTTCAACACATTGCTCTTGGTATAGCTAAAGGGATTGAGTATCTTCATCAAGGTTGCAATCATCCCATTATTCACTTTGACATCAATCCTCACAACGTGTTACTTGATGACAACTTCACACCAAAAATCTCTGATTTTGGCTTAGCCAAATTGTGTTCGAAGAATCCCAGTTTGGTGTCGATGACAGCTGCTAGGGGAACCTTGGGATACATTGCACCTGAAGTCTTCTCTAGAAACTTTGGAAACGTATCTTACAAGTCTGATATTTACAGTTATGGAATGTTGTTGTTAGAAATGGTTGGTGGGAGGAAGAATGTGGACATGTCTTCTGCAGAAGATTTCCATGTTCTGTACCCAGATTGGATCCATAACCTGGTTGATGGAGATGTGCATATCCATGTTGAGGATGAAGATGATTTTAAGATTGCAAAGAAACTAGCAATTATTGGGCTTTGGTGCATTCAGTGGCAGCCAGGGAACCGTCCATCCATAAAATCTGTGATACACATGCTAGAAACTCAAGAGGAAAACCAGATTGCCGTGCCTCCTAATCCATTTCACTCAGCAACTTCCACTACAGTTAAGGGACCCATTTCGACAAGACGACCTTTGCATTTGGAAGTGATTGAAGAATGA 1116 0.4319 MKSPTAIVGSIFLGLAVTAVFMSILYFREKQEDQARVDKFLEDYRAEKPARFTYADLKRITNGFKEMLGEGAHGAVFRGKLSSEIPVAVKILNNTEGEGNEFINEVGIMGKIHHINVVRLLGFCAEGLHRALVYNFFPNGSLQSFIFPPEDKDRFLGWEKLQHIALGIAKGIEYLHQGCNHPIIHFDINPHNVLLDDNFTPKISDFGLAKLCSKNPSLVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNVDMSSAEDFHVLYPDWIHNLVDGDVHIHVEDEDDFKIAKKLAIIGLWCIQWQPGNRPSIKSVIHMLETQEENQIAVPPNPFHSATSTTVKGPISTRRPLHLEVIEE 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02352 371 Pfam Protein tyrosine and serine/threonine kinase 64 331 IPR001245 GO:0004672|GO:0006468
Vimu1g02352 371 ProSitePatterns Protein kinases ATP-binding region signature. 68 90 IPR017441 GO:0005524
Vimu1g02352 371 FunFam PR5-like receptor kinase 137 342 - -
Vimu1g02352 371 SUPERFAMILY Protein kinase-like (PK-like) 46 334 IPR011009 -
Vimu1g02352 371 Gene3D Phosphorylase Kinase; domain 1 35 136 - -
Vimu1g02352 371 FunFam S-receptor-like serine/threonine-protein kinase 29 136 - -
Vimu1g02352 371 Gene3D Transferase(Phosphotransferase) domain 1 137 344 - -
Vimu1g02352 371 ProSiteProfiles Protein kinase domain profile. 62 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02352 371 PANTHER RUST RESISTANCE KINASE LR10-RELATED 36 349 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02352 Vimu-Chr1 34061215 34062330 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02352 51 346 Receptor kinase-like Gene Family AT4G18250 45.752 3.55e-97 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu1g02352 PK_Tyr_Ser-Thr 3.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02352 - - pvu:PHAVU_L001000g 669.848