Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02351 ATGAAGTTATCGCTAATACTTATTCTTATCAGAAGTGGCAGCGCTCATAACGAGTGCGATGGAGAAAACTTGTCTTGTGGGCCGAACCAACCCCTTATCAGATTTCCCTTCCAACTCGTGAAGGAGATGAAGGAGCCATGCAGTTATCCCCTTCTTTGTCTTTCTTGTACTGAAAATAATCAGACCATGCTTCTGCTTCCTACGATCAAACTCCAAGTCACTTACATAGACTACGAAAGAAAAAAAATTGTCTTAACTGACCCAGAAAACTGCTTTTCCAACAAGTTTATGCAAATCATCAATTTTGTTCAGACTTACCAATTTGAATCACTATATCGTTACCAATTTGACTCACAGACTGGGCATCGACACCGCTACAGGGAAGACTCGTATTCCCAAGATTTGGTCTCCTGTCCGATTTTCATTTCTGGTTCTTTTGAAAGTGTCCTCGAATTAGATCTAACATCCTGTACCAAGATGTTCGACATCCCTTCTTCGCCCCTTTTCACTGACAGCTTTCCCTTGTATTTGAGATGGTTCAAACCAAATTGTTCAGAGTGCGAAGCTAAAGGCAAGAGATGTAAATGGAAGGCCAACAACGACACAGAAGGAAACATCGAATGTTTTGAATGCACACGAAAAAGAATTCACGTTCCTAAATCTCTTATTTTTGCTACTACAGGTCATATCAGAGACTCTTACACTTTCGCTTTTTGA 717 0.4045 MKLSLILILIRSGSAHNECDGENLSCGPNQPLIRFPFQLVKEMKEPCSYPLLCLSCTENNQTMLLLPTIKLQVTYIDYERKKIVLTDPENCFSNKFMQIINFVQTYQFESLYRYQFDSQTGHRHRYREDSYSQDLVSCPIFISGSFESVLELDLTSCTKMFDIPSSPLFTDSFPLYLRWFKPNCSECEAKGKRCKWKANNDTEGNIECFECTRKRIHVPKSLIFATTGHIRDSYTFAF 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02351 238 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 220 IPR046948 -
Vimu1g02351 238 Pfam Wall-associated receptor kinase galacturonan-binding 23 87 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02351 Vimu-Chr1 34060352 34061098 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02351 25 209 C3H Transcription Factor Family AT2G46495 29.064 4.11e-15 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02351 - - var:108320263 384.03