Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02347 ATGCCTATTCGATACTCATACAAGGAGATTAAAAAAATGACCAAAGGTTTCAATGAAAAATTGGGTGAAGGAGGTTATGGTTCTGTATTTAAGGGAAAGTTGCGTAGTGGACCATGTGTTGCCATAAAAGTGTTGCGAAAATCAAAAGGTAAAGGAGAAGACTTCATCAATGAAGTTGCAACAATTGGAAGAATACATCACCAAAATGTAGTGCATTTAATTGGATATTGTGCTGAAGGCTCAAAACGTGCCCTTGTTTATGAGTTCATGTCTAATGGATCTCTTGACAAATTTATATTTTCTAAGGAAGGAAATCTGCATTTAACCTATGACACAATACATGATATAGCAATTGGAGTAGCACGTGGAATTTCATATCTACATCATGGGTGTGAGATGCAGATTTTGCATTTTGACATCAAACCCCACAACATCCTCCTTGATGAAAAATTCATTCCAAAGATATCTGATTTTGGATTGGCAAAACTATATTCAACAGATAAAAGTGTTGTGAGTATGACAGCAGCAAGAGGAACAATTGGGTACATGGCTCCAGAGTTGTTTTATAAAAATGTCGGAAGAATATCACATAAGTCTGATGTTTATAGCTTTGGAATGTTTTTGATGGAAATAGCAAGCAAGAGGAAAAACCTAAACCCCCATGCAGAGCATTCAAGCCAACTTTACTTTCCCTTTTGGATTTATGATCAACTTGATAAAGGGAAAGATATAGAAATGGAAGATGTCACCGAGAATGAGAACAAAATTGTAAAAAAGATGATGATAGTTTCACTTTGGTGTATACAATTGAAACCAAATGATCGCCCTTCCATGAATAAAGTAGTGGAAATGCTTGAAGGAGACATTGCAAACCTAAAATTACCTCCAAAGCCTTCTCTATATCCACATGAAACATTGGAAGATGATGAAAGAATATCCTCTCACCAAACAACATTGTCTGACTTTGTTGGTTTTTCAAGTTATGCAGTGAAGATTGTCTCAAATGTTCCCCTAGATGACAGCATTTGA 1029 0.3576 MPIRYSYKEIKKMTKGFNEKLGEGGYGSVFKGKLRSGPCVAIKVLRKSKGKGEDFINEVATIGRIHHQNVVHLIGYCAEGSKRALVYEFMSNGSLDKFIFSKEGNLHLTYDTIHDIAIGVARGISYLHHGCEMQILHFDIKPHNILLDEKFIPKISDFGLAKLYSTDKSVVSMTAARGTIGYMAPELFYKNVGRISHKSDVYSFGMFLMEIASKRKNLNPHAEHSSQLYFPFWIYDQLDKGKDIEMEDVTENENKIVKKMMIVSLWCIQLKPNDRPSMNKVVEMLEGDIANLKLPPKPSLYPHETLEDDERISSHQTTLSDFVGFSSYAVKIVSNVPLDDSI 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02347 342 Gene3D Phosphorylase Kinase; domain 1 1 89 - -
Vimu1g02347 342 PANTHER RUST RESISTANCE KINASE LR10-RELATED 4 306 IPR045874 GO:0004672
Vimu1g02347 342 SUPERFAMILY Protein kinase-like (PK-like) 3 286 IPR011009 -
Vimu1g02347 342 SMART serkin_6 15 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02347 342 FunFam PR5-like receptor kinase 90 296 - -
Vimu1g02347 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Vimu1g02347 342 FunFam serine/threonine-protein kinase PBS1-like 1 89 - -
Vimu1g02347 342 ProSitePatterns Protein kinases ATP-binding region signature. 21 43 IPR017441 GO:0005524
Vimu1g02347 342 Pfam Protein tyrosine and serine/threonine kinase 17 285 IPR001245 GO:0004672|GO:0006468
Vimu1g02347 342 Gene3D Transferase(Phosphotransferase) domain 1 90 293 - -
Vimu1g02347 342 ProSiteProfiles Protein kinase domain profile. 15 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02347 Vimu-Chr1 34040682 34041710 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02347 4 317 Receptor kinase-like Gene Family AT4G18250 51.829 2.16e-112 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu1g02347 PK_Tyr_Ser-Thr 5.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02347 - - gmx:100305367 566.229