Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02343 ATGCCAGTTCGATCTTTTTGGGGCTGGTGGTCACTGCTGTCTTTAAGAGCATTGTCTAATTTAGGGAAAAACAAGAAGATCAAGAAAGAGGCAGAAAAGCCTGCAAGATTCACCTACGCTGACCTTAAAAGAATCACCAATGGCTTTAAGGAAATGTTAGGAGAAGGAGCTCATGGGGCTGTCTTCAGAGGAAAACTTTCCAGTGAGATACCCGTGGCTGTGAAGATCCTCAACAATACAGAGGGAGAAGGGAATGAGTTCATCAATGAAGTGGGAATTATGGGCAAAATCCATCACATCAACGTGGTGCGCTTGCTTGGCTTCTGTGCAGAAGGACTCCATCGTGCTCTTGTCTACAATTTCTTTCCAAATGGTTCTTTACAAAGCTTCATTTTTCCTCCAGAAGACATGGACCATTTCCTTGGCTGGGAGAAGCTTCAACACATTGCTCTTGGTATAGCTAAAGGGATTGAGTATCTTCATCAAGGTTGCAATCATCCCATTATTCACTTTGACATCAATCCTCACAACGTGTTACTTGATGACAACTTCACTCCAAAAATATCTGATTTTGGCTTAGCCAAATTGTGTTCCAAGAATCCCAGTTTGGTGTCGATGACAGCTGCTAGGAGAACCTTGGGATACATTGCACCTGAAGTCTTCTCCAGAAACTTTGGGAACGTGTCTTACAAGTCTGATATTTACAGTTATGGAATGCTGTTGTTAGAAATGGTAGGTGGGAGGAAGAATGTGGACATGTCTTCTCCAGAAGATTTCCATGTTCTGTACCCTGATTGGATCCATAACCTGGTTGATGGAGATGTGCGTATCCATGTTGAGGATGAAGATGATTTTAAGATTGCAAAGAAACTAGCAATTATTGGGCTTTGGTGCATTCAGTGGCAGCCAGGGAACCGTCCATCCATAAAATCTGTGATACACATGCTAGAAACTCAAGAGGAAAACCAGATTGCCGTGCCTCCTAATCCATTTCACTCAGCAACTTCCACTACAGTTAAGGGACCCATTTCGACAAGACGACCTTTGCATTTGGAAGGTCTTCTTATACCGATATCTCGGAGCACCTTTACAGGTACCACCCCCTCTTGGGCAAAGGTTGAAGAACGGACGGTGAAGGCAATTGGAGATTTCGCATCAGAAGGAAGCAGAACCACGCCATCGAGGTTAATGCTTTCGGTCCTTGAAATTCCAACCGGAACATTTTGGCGCCCACCGTGGGGCCGAGTGGCAAACCCAAATGGCGACCACGAGGAGCATGGAGGAACAACAAAACACCAGAAAGATGATCAGAAACAAAGACGAGCGTTCGGTCTCAACATCACTACTCCATATCAACATCAAGAAATTTCACTAAAGCGAAGATTACACAGCATGAGTTACCATCTCTACATGGAACATCTTCAACAAGATAAGTGTTTCTGA 1443 0.4407 MPVRSFWGWWSLLSLRALSNLGKNKKIKKEAEKPARFTYADLKRITNGFKEMLGEGAHGAVFRGKLSSEIPVAVKILNNTEGEGNEFINEVGIMGKIHHINVVRLLGFCAEGLHRALVYNFFPNGSLQSFIFPPEDMDHFLGWEKLQHIALGIAKGIEYLHQGCNHPIIHFDINPHNVLLDDNFTPKISDFGLAKLCSKNPSLVSMTAARRTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNVDMSSPEDFHVLYPDWIHNLVDGDVRIHVEDEDDFKIAKKLAIIGLWCIQWQPGNRPSIKSVIHMLETQEENQIAVPPNPFHSATSTTVKGPISTRRPLHLEGLLIPISRSTFTGTTPSWAKVEERTVKAIGDFASEGSRTTPSRLMLSVLEIPTGTFWRPPWGRVANPNGDHEEHGGTTKHQKDDQKQRRAFGLNITTPYQHQEISLKRRLHSMSYHLYMEHLQQDKCF 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02343 480 Gene3D Transferase(Phosphotransferase) domain 1 122 329 - -
Vimu1g02343 480 MobiDBLite consensus disorder prediction 419 437 - -
Vimu1g02343 480 ProSiteProfiles Protein kinase domain profile. 47 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02343 480 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Vimu1g02343 480 MobiDBLite consensus disorder prediction 416 437 - -
Vimu1g02343 480 PANTHER RUST RESISTANCE KINASE LR10-RELATED 25 334 IPR045874 GO:0004672
Vimu1g02343 480 Gene3D Phosphorylase Kinase; domain 1 19 121 - -
Vimu1g02343 480 FunFam S-receptor-like serine/threonine-protein kinase 18 121 - -
Vimu1g02343 480 Pfam Protein tyrosine and serine/threonine kinase 49 316 IPR001245 GO:0004672|GO:0006468
Vimu1g02343 480 SUPERFAMILY Protein kinase-like (PK-like) 32 319 IPR011009 -
Vimu1g02343 480 FunFam PR5-like receptor kinase 122 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02343 Vimu-Chr1 33977730 33980539 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02343 36 331 Receptor kinase-like Gene Family AT4G18250 46.078 3.89e-95 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu1g02343 PK_Tyr_Ser-Thr 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02343 - - pvu:PHAVU_L001000g 602.438