Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02340 ATGAAGTCTCCAACCTCTATTGTAGGTTCCATCTTTTTGGGGCTGTTGGTCACTGCTGTCTTTATGAGCATCCTCTATTTTAGGGAAAAACAAGAAGATCAAGCAAGAGTGGACAAGTTTTTAGAGGACTACAGGGCAGAAAAGCCTGCAAGATTCACCTACGCCGACCTTAAAAGAATCACCAATGGCTTTAAGGAAATGTTAGGAGAAGGAGCTCATGGGGCTGTCTTCAGAGGTAAACTTTCCAGTGAGATATCCGTGGCTGTGAAGATCCTCAACAATACAGAGGGAGAAGGGAATGAGTTCATCAATGAAGTGGGAATTATGGGCAAAATCCATCACATCAACGTGGTGCGCTTGCTTGGCTTCTGTGCAGAAGGACTCCATCGTGCTCTTATCTACAATTTCTTTCCAAACGGTTCCTTACAAAGCTTCATATTTCCACCAGAAGACAAGGACCATTTCCTTGGCTGGGAGAAGCTTCAACACATTGCTCTTGGTATAGCTAAAGGAATTGAGTATCTTCATCAAGGTTGCAATCATCCCATTATTCACTTTGACATCAATCCTCACAACGTGTTACTTGATGACAACTTCACTCCAAAAATATCTGATTTTGGCTTAGCCAAATTGGGAACCTTGGGATACATTGCACCTGAAGTCTTCTCCAGAAACTTTGGGAACGTGTCTTACAAGTCTGATATTTACAGTTATGGAATGTTGTTGTTAGAAATGGTTGGTGGGAGGAAGAATGTGGACATGTCTTCTCCAGAAGATTTCCATGTTCTGTACCCTGATTGGATCCATAACCTGATTGATGGAGATGTGCATATCCATGTTGAGGATGAAGATGATTTTAAGATTGCAAAGAAACTAGCTATTATTGGGCTTTGGTGCATTCAGTGGCAGCCAGGGAACCGTCCATCCATAAAATCTGTGATACATATGCTAGAAACTCAAGAGAAAAACCAGATTGCCGTGCCTCCTAATCCATTTCACTCAGCAACTTCCACTACAGTTAAGGGACCCATTTCAACAAGACGACCTATGCATTTGGAAAAGATAAAGGAGAACGTAAAGAGGAGGAATTTGACTGACTATACCCAAGCTTCCATCGCACAGTTGGACTTTTGTGGCTGTGAATTTCGAAGAATTTGTATGAGTGTGACTCTCACTGAATTATTGTTTGGGGAGTCAATTCCTGGAACTTATTATGCACTTTCTCAATCTGTGAATTTTTCTGATATCAAGTGTGGTATTCCCGAGTTGAAAGGAGATAATTATAAGGTTTGGAAGGAAAGAGTTCTTCTTCATTTAGGCTGGATGGACATTGACTATGCTATTAGAAAACCAGAACCACCGGGTATTAATGAGACCAGCACTCAAGATGACATTGATCTTTATGAAAAATGGGAGAGGTCAAATCGTCTCTCCGTTAAGTTCATAAAAACCAATATTTCCGCTGGGATCCGGGGTTCAGTTGACCAGTATGAGAATGTCAAAGATTTACTAAGGGCTATTGATGAGCAGTTTACGACATCCGATAAATCTCTTGCCAGCACCCTTATAATGCAATTTTCATCCTTAAAACTCACTGGAATTAAGGGACTGCGTGATCATATCATGCACATTAGGGATATTGTGGCTCAACTGAAAGCTTTGGAAGTTACCATGTCTGATTCTTTCCTGGTACACTATATTTTGTGCACTTTGCCTCACCATTATGCACCCTTCAAAATCTCTTACAACACACATAAAGATAAATGGTCTATTAATGAATTATTAGCCATGTGTGTTCAAGAAGAAGAAAGGCTATTAATAGAAGAAGGGGAGAGGGTGAACTTGACTACTTCTTTTGAGAATAAGAAGAACCAAGTTAATAAGAAGGGAAAGATTCCTGCTATGCCAGTTATTAAGAAGGAGTCTAGTTGTTTCTTTTGTAAAAAGAAAGGACACATGAAGAAAGACTGCTTAAAATTTAAGAATTGGCTTGATAAGAAAGGTACTCCATTTACTTTTGGTATGCAAAACCTAAGGAGGCCAATGGGAAGTGAGCAATATATTTACTCAGGGAGTAAGATGAGTTCACATGTGGAGGCCATTGGAACATGTGTTATGAATGAGAATTCTTCTATTTTAAGGCACCGTAGATTGGGACACATCTCCATTGAGAGAATTAAGCGATTAGTCAATGAAGGAGTACTTAGTTCTTTGGATTTTACTGATTTTGAGACTTGTGCTGAAGTTGAGATACAATGCGGAAAGCAAATCAAGACTGTGAGATCAGATAGAGGTGGAGAGTATTATGGTAGATACACGGAGAATGGACATGGTGAGAAGTATGAGGAACACCGTTTGAGTTATTCAAATGTTGGAAACCAAGTTTGTGACATATACGCGTTTGGGGATGTCCGTCTGAAGACTATTAGTGAGTATTTCATTGAATATGCTGAAAAGTCTAAGGGATATAGATTATATTGTCCATCACATAACACTAGGATTGTGGAGTCAAGAAATGCAAGTTTTCTTGAGAATGACTTGGTTAGTGGGACTCAACCCTCTAGCTCAAGTGATAGATTGGTTGTCATTCACACCCCTCAAGCACAAATGGGTGTTAGACAAACAATAATTGAAGCTTCACAACATGCTGAAAATGACCTTACAGATCAAGTTGCTAATCAGGAACAAGTTGAGCAACCTATTGAACAGTTGCTTGAGCAACAAGCAACATTAAGAAGATTTACTAGAGTTAAAAGGCCATCAATTCCTAGTGATTATATAGTGTATTTGCAAGAAGTTGACTACAATATTGGAGCTGCAAATGATCCTGAAACGTTTTCACAAGCCATGACTCATTTTGATTTTGAGTTACATCAAATGGATGTGAAAACAACATTCCTTAATGGTCATTTGGAAGAAGAGGTTTACATGAAACAACCTAAGGATTCTCTTCTAAAGATACTTAATAAATCCATCTATGGATTAAAACAAGCCTCCCGCGAATGGTATCTAAAATTCCATGATGTTATTACTTCATTCGGTTTTGAAGAAAATACCATGGATCAATGTAGATACCAAAAGGTCAGTGGGTGCAAGATTTGTTTCCTTGTTTTATACATGGATGATGTTTTGCTTGTAACCAACGAGAAGGGCTTGCTATATGAAGTGAAACAATTTCTCTCAAAGAGCTTTGACATGAAGGATATGGGAGAGGCATCTTATGTCATTGACATTAAGATCCATAGGGAAAAATCTCGACTTTTGGAAGCCTTATGTATGCACATGTTTGCACTAGACTTGACATTGCATATGTTGTTGGAGTTTTTGGGAAGATATCAAAGTAATCCAGGTGTTGACCACTGGAAAGCTGCAAAGAAGAGTTTCATTTTTGGGCTTAGAGTTATGGACTCTATTTCTAGGCCATTAAGGTTGTACTGTGACAACTCTGCTGCGGTGTTTATGGCTAAGAATTATAAAAGTGGATGTCGAAGTAAGCACATTGACATCAAATACTTAGCCATTAGAGAACGTGTTAAGGAAAAGAAAGTGGTCATTAAGTACATAAGCATTGAGTTGTGA 3579 0.3889 MKSPTSIVGSIFLGLLVTAVFMSILYFREKQEDQARVDKFLEDYRAEKPARFTYADLKRITNGFKEMLGEGAHGAVFRGKLSSEISVAVKILNNTEGEGNEFINEVGIMGKIHHINVVRLLGFCAEGLHRALIYNFFPNGSLQSFIFPPEDKDHFLGWEKLQHIALGIAKGIEYLHQGCNHPIIHFDINPHNVLLDDNFTPKISDFGLAKLGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNVDMSSPEDFHVLYPDWIHNLIDGDVHIHVEDEDDFKIAKKLAIIGLWCIQWQPGNRPSIKSVIHMLETQEKNQIAVPPNPFHSATSTTVKGPISTRRPMHLEKIKENVKRRNLTDYTQASIAQLDFCGCEFRRICMSVTLTELLFGESIPGTYYALSQSVNFSDIKCGIPELKGDNYKVWKERVLLHLGWMDIDYAIRKPEPPGINETSTQDDIDLYEKWERSNRLSVKFIKTNISAGIRGSVDQYENVKDLLRAIDEQFTTSDKSLASTLIMQFSSLKLTGIKGLRDHIMHIRDIVAQLKALEVTMSDSFLVHYILCTLPHHYAPFKISYNTHKDKWSINELLAMCVQEEERLLIEEGERVNLTTSFENKKNQVNKKGKIPAMPVIKKESSCFFCKKKGHMKKDCLKFKNWLDKKGTPFTFGMQNLRRPMGSEQYIYSGSKMSSHVEAIGTCVMNENSSILRHRRLGHISIERIKRLVNEGVLSSLDFTDFETCAEVEIQCGKQIKTVRSDRGGEYYGRYTENGHGEKYEEHRLSYSNVGNQVCDIYAFGDVRLKTISEYFIEYAEKSKGYRLYCPSHNTRIVESRNASFLENDLVSGTQPSSSSDRLVVIHTPQAQMGVRQTIIEASQHAENDLTDQVANQEQVEQPIEQLLEQQATLRRFTRVKRPSIPSDYIVYLQEVDYNIGAANDPETFSQAMTHFDFELHQMDVKTTFLNGHLEEEVYMKQPKDSLLKILNKSIYGLKQASREWYLKFHDVITSFGFEENTMDQCRYQKVSGCKICFLVLYMDDVLLVTNEKGLLYEVKQFLSKSFDMKDMGEASYVIDIKIHREKSRLLEALCMHMFALDLTLHMLLEFLGRYQSNPGVDHWKAAKKSFIFGLRVMDSISRPLRLYCDNSAAVFMAKNYKSGCRSKHIDIKYLAIRERVKEKKVVIKYISIEL 1192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02340 1192 Gene3D - 618 670 - -
Vimu1g02340 1192 SMART c2hcfinal6 643 659 IPR001878 GO:0003676|GO:0008270
Vimu1g02340 1192 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 955 1086 IPR013103 -
Vimu1g02340 1192 SUPERFAMILY Retrovirus zinc finger-like domains 640 666 IPR036875 GO:0003676|GO:0008270
Vimu1g02340 1192 ProSiteProfiles Zinc finger CCHC-type profile. 644 657 IPR001878 GO:0003676|GO:0008270
Vimu1g02340 1192 Pfam Protein tyrosine and serine/threonine kinase 64 317 IPR001245 GO:0004672|GO:0006468
Vimu1g02340 1192 ProSiteProfiles Protein kinase domain profile. 62 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02340 1192 Pfam gag-polypeptide of LTR copia-type 471 604 - -
Vimu1g02340 1192 SUPERFAMILY DNA/RNA polymerases 953 1163 IPR043502 -
Vimu1g02340 1192 ProSitePatterns Protein kinases ATP-binding region signature. 68 90 IPR017441 GO:0005524
Vimu1g02340 1192 Gene3D Transferase(Phosphotransferase) domain 1 137 330 - -
Vimu1g02340 1192 FunFam Os07g0541700 protein 137 215 - -
Vimu1g02340 1192 Pfam GAG-pre-integrase domain 687 748 IPR025724 -
Vimu1g02340 1192 SUPERFAMILY Protein kinase-like (PK-like) 46 319 IPR011009 -
Vimu1g02340 1192 PANTHER RUST RESISTANCE KINASE LR10-RELATED 36 335 IPR045874 GO:0004672
Vimu1g02340 1192 Gene3D Phosphorylase Kinase; domain 1 35 136 - -
Vimu1g02340 1192 FunFam S-receptor-like serine/threonine-protein kinase 29 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02340 Vimu-Chr1 33936531 33946157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02340 12 331 Receptor kinase-like Gene Family AT1G66910 41.787 9.53e-82 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu1g02340 PK_Tyr_Ser-Thr 1.3e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02340 - - pvu:PHAVU_L001000g 638.262