Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02339 ATGATGGGAAGTGTGTTGCTCCTCCAACGTGATTCTGTATTGATGAAGCTATCGCTAATACTTATTCTTATCAGAAGTGGCAGCGCTCATAACGAGTGCCATGAGGAAAATTTGTCTTGTGGGCCGGACCAACCCCTTATCAGATTTCCCTTCCAACTCGTGAGGGAGATGAAGGAGCCATGCAGTTATCCCCGTCTTTGTCTTTCTTGTACTGAAAATAATCAGACCATGCTTCTGCTTCCTGAGATCAAACTCCAAGTCAATGACATACGCTACGAATATCAGGAAATAGTCTTAACTGACCCGGAAAACTGCTTGTTCAACAAGTATATGCAAATAACCAATTTTGTTCAGAGTTACCAATTTGAATTATACGATGGAAACTTGAGCTTCTTCAATTGTACTTCAGCTGGGCATCGACACCTGCGCTACCGCTACAGGGAAGACTCGTATTCCCAAGATTTGGTCTCCTGTCGATTTTCGTTTCTGATTCTTTTGAAAGTGTCCTCGAATTAG 516 0.4264 MMGSVLLLQRDSVLMKLSLILILIRSGSAHNECHEENLSCGPDQPLIRFPFQLVREMKEPCSYPRLCLSCTENNQTMLLLPEIKLQVNDIRYEYQEIVLTDPENCLFNKYMQITNFVQSYQFELYDGNLSFFNCTSAGHRHLRYRYREDSYSQDLVSCRFSFLILLKVSSN 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02339 171 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 15 140 IPR046948 -
Vimu1g02339 171 Pfam Wall-associated receptor kinase galacturonan-binding 33 101 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02339 Vimu-Chr1 33935641 33936156 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02339 39 144 C3H Transcription Factor Family AT2G46495 34.579 5.13e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02339 - - var:108320263 231.491