Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02330 ATGTCTCCACCTGCTACTGTAGGTTCGATCTTTTTGGGGCTGGTGGTCACTGCTGTCTTTAAGAGCATTCTCTATTTTAGGGAAAAACAAGAAGATCAAGCAAGAGTGGACAAGTTTTTAGAGGACTACAGGGCAGAAAAGCCTGCAAGATTCACCTACGCCGACCTTAAGAGAATCACCAATGGCTTTAAGGAAATGTTAGGAGAAGGAGCTCATGGGGCTGTGTTCAGAGGAAAGCTTTCCAGTGAGATACCCGTGGCTGTGAAGATCCTCAACAATACAGAGGGAGAAGGGAATGAGTTCATCAATGAAGTGGGAATTATGGGCAAAATCCATCACATCAACGTGGTGCGCTTGCTTGGCTTCTGTGCAGAAGGACTCCATCGTGCTCTTGTCTACAATTTCTTTCCAAACGGTTCTTTACAAAGCTTCATATTTCCACCAGAAGACAAGGACCGTTTCCTTGGCTGGGAGAAGCTTCAACACATTGCTCTTGGTATAGCTAAAGGGATTGAGTATCTTCATCAAGGTTGCAATCATCCCATTATTCACTTTGACATCAATCCTCACAACGTGTTACTTGATGACAACTTCACACCAAAAATCTCTGATTTTGGCTTAGCCAAATTGTGTTCCAAGAATCCCAGTTTGGTGTCGATGACAGCTGCTAGGGGAACCTTGGGATACATTGCACCTGAAGTCTTCTCTAGAAACTTTGGAAACGTATCTTACAAGTCTGATATTTACAGTTATGGAATGTTGTTGTTAGAAATGGTTGGTGGGAGGAAGAATGTGGACATGTCTTCTGCAGAAGATTTCCATGTTCTGTACCCAGATTGGATCCATAACCTGGTTGATGGAGATGTGCATATCCATGTTGAGGATGAAGATGATTTTAAGATTGCAAAGAAACTAGCTATTATTGGGCTTTGGTGCATACAGTGGCAGCCAGGGAACCGTCCATCCATAAAATCTGTGATACGCATGCTAGAAACTCAAGAGGAAAACCAGATTGCCGTGCCTCCTAATCCATTTCACTCAGCAACTTCCACTACAATTAAGGGACCCATTTCGACAAGACGACCTTTGCATTTGGAAGTGATTGAAGAATGA 1113 0.4322 MSPPATVGSIFLGLVVTAVFKSILYFREKQEDQARVDKFLEDYRAEKPARFTYADLKRITNGFKEMLGEGAHGAVFRGKLSSEIPVAVKILNNTEGEGNEFINEVGIMGKIHHINVVRLLGFCAEGLHRALVYNFFPNGSLQSFIFPPEDKDRFLGWEKLQHIALGIAKGIEYLHQGCNHPIIHFDINPHNVLLDDNFTPKISDFGLAKLCSKNPSLVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNVDMSSAEDFHVLYPDWIHNLVDGDVHIHVEDEDDFKIAKKLAIIGLWCIQWQPGNRPSIKSVIRMLETQEENQIAVPPNPFHSATSTTIKGPISTRRPLHLEVIEE 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02330 370 Gene3D Phosphorylase Kinase; domain 1 34 135 - -
Vimu1g02330 370 PANTHER RUST RESISTANCE KINASE LR10-RELATED 35 348 IPR045874 GO:0004672
Vimu1g02330 370 ProSiteProfiles Protein kinase domain profile. 61 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02330 370 FunFam PR5-like receptor kinase 136 341 - -
Vimu1g02330 370 Pfam Protein tyrosine and serine/threonine kinase 63 330 IPR001245 GO:0004672|GO:0006468
Vimu1g02330 370 SUPERFAMILY Protein kinase-like (PK-like) 45 333 IPR011009 -
Vimu1g02330 370 Gene3D Transferase(Phosphotransferase) domain 1 136 343 - -
Vimu1g02330 370 ProSitePatterns Protein kinases ATP-binding region signature. 67 89 IPR017441 GO:0005524
Vimu1g02330 370 FunFam S-receptor-like serine/threonine-protein kinase 28 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02330 Vimu-Chr1 33830620 33831732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02330 50 345 Receptor kinase-like Gene Family AT4G18250 45.752 4.62e-97 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu1g02330 PK_Tyr_Ser-Thr 4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02330 - - pvu:PHAVU_L001000g 670.618