Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02321 TTGTCATATCGAACTTATGTTCATGCTTTACTATCTAATACATTTCTTTATGTTTGGCAGTGGGCTTTGAATGAATTGAAGAAACCAATAGTCACGTATGAATGGCTAAAACAATGCTCAGAGGAGCATCGTGTTGTTCCTCAAGAGTCATACAAGGTCCTTCCTTTCTCTGGGTTAAAGATTTGTGTTACTGGAATTCCCGCAGATGTTCGTAAAGAGATGGAGAAGCTTATTTTACAAAATGGTGGAAAATACTCTGCGGAATTGACAAAGAATTGCACACATTTGATTTCTGAGATATCCTTCTCATAG 312 0.3718 MSYRTYVHALLSNTFLYVWQWALNELKKPIVTYEWLKQCSEEHRVVPQESYKVLPFSGLKICVTGIPADVRKEMEKLILQNGGKYSAELTKNCTHLISEISFS 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02321 103 ProSiteProfiles BRCT domain profile. 29 53 IPR001357 -
Vimu1g02321 103 Gene3D BRCT domain 4 53 IPR036420 -
Vimu1g02321 103 ProSiteProfiles BRCT domain profile. 51 103 IPR001357 -
Vimu1g02321 103 PANTHER REGULATOR OF TY1 TRANSPOSITION PROTEIN 107 19 100 - -
Vimu1g02321 103 Pfam twin BRCT domain 59 99 IPR001357 -
Vimu1g02321 103 SUPERFAMILY BRCT domain 25 98 IPR036420 -
Vimu1g02321 103 Gene3D BRCT domain 54 101 IPR036420 -
Vimu1g02321 103 CDD BRCT_TopBP1_rpt2_like 55 103 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02321 10 101 Core DNA Replication Machinery Family AT1G77320 61.957 4.21e-33 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02321 K10728 - gmx:100804966 159.458
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02321 1 33714669 33715062 Vimu1g02321 1 33714669 33715062 ECH