Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02319 ATGAGCTCAAGGATATCTTATACTTATTTAAACTTGGTGGATATTTGTGTTCTTGACTGTTCTTACGCTCCACAAGGTGACAAGTATAAGGTAGCTAAACGATGGGGCCACATTCATATTGTGATAAAGAAATGGTTTGATCAATCAATTGCTCGGAGAGCATGTCTGAATGAGGAGTTCTTCCCTGTTCAGCATGGATCTGTATCTTCACATAAAGTAACTAGGGACTTAACAATGCAACATAGCCAAGAAAAGGATATTGGGAAATTGCAATCTGCGGCATCCTCAGGTACTACAGATTCAAATGTGCAAGTTTCTTGTGCTGAGTTCAGGGATAGAGATCATGAAGCTATGCCATCAGAATTTATGTCCTCAGTTTCACAAACCCGTATATTTGCTAAGGAGGCAGATGCTGAACCTCCATTGCAGACCAGTGGTGAATTGAACCTTGACAATATTGTTGCTGATGATTCTGAATCTGATGATAATGACCTGTACTTATCAGAGTGCAGAATATTACTAGTTGGTTTTGAAGCTTTAGAAATGCGGAAACTAATTAATATTGTGCGCAAAGGTGGAGGCTCCCGGTATATGTCTTTTAATGACAAATTGACACACATAGTAGTTGGGAATCCTACTGAAATGGAAAAGAAGGATGTGAGGAGTCTCGCTGCTTTAGGTGTAATTTATGTTGTTAAAACCTCATGGCTTGAAGATTGTGACCATAAAAAGAAAGAAGTCCCAGTGCTTAGGAGACACATTGCGTATGATCTACTTCAGCCAAAAGCAAGCTTGGTAAAAGCTGTAACAGAAAGCACATCTATGGATCACAGTAAAAGCTCCAGCTCTCATCAAAGCTCGCATCAGCCAGAATCTTTAGAGAAAAGAAAAGAACAGATAAAAGATATGGATAAAAATGGTCACTCATTCCGTAAAGCAAATTGTAGAACAATGTTGCAAAATCAACTTCCTGATAATAAATTGAGCACACAAGGAATGAGCCAGCATGACTTCAGTGTTCAATATGAAAAATCAGCAAATGTTTTCAGAGGGAAACTGTTTTATTTTTCAAATTTGTTTCCTGAAGAAAAGGAACCTGACTGCTCTTACATTAAACATGCCGCCTCACATGAATCCCTTGGTCTTGTTAGTGTGGATGCACAAATATACCCTACCAGAGGTGAGATTGTTCAATGGATAAGTCAAGGGGGAGGAGAGGTAATAAGTGGGCAAGCAGAACAGATTGTCCACTATATTGTTGAGTGTCATGGTGTAACACCCATGTTGACTGGTGATTCGAAGAGTTTGTCTGTTTCCAGTCACTGGATACGATCTTGTTTGGAGGCTGGATCCTTGCTGGATGTTGGTTGTCACATTCTTTATTCTCCACTTCCCTGCCATGTTCCCTTGCCTGGATTTGAAAGATTCAGGTTTTGTGTTTCACAGTATGAGGAGAAAGACAGAAATCTCCTAAGAAACTTGTGTTTTGTATTAGGAGCTAAATTTGGGGAGAAGTTGCATAAGAAGGTTACGCATTTATTGTGTAAATTCACCAATGGACCCAAGTATGATGGTGCTCGTAAATGGGGGATTCAATCAGTTACATGCGAATGGATATTTGAATGCGTCAAACAGAATGGGGTTGTTGCCGTTGATCAATTTTTACCAAAAGAAGTAACGGCTCAAGATCGAGAGGCAGGACTTTGCACCGTGAGTCAATTTCCTACCCAGGCTGCTCAAATGATAAGTGACATGCCCTCGCAATTGTCAAGCCAATCACAAATTTTGAGAGGCATCACAGATAACAATGTGGGTTGTGGAGTTGGTAATCATGAGACCAATTTTAAGAAACCAAGTGTTTATAGCAAAAAGGCAAGACTTGTAGAAGAACCTTGCCTATCCAACAAGATGCCTTCGGCATCAAATTCAGATATTCATGCCTATGGAAAGAATTTTTCTGAAGATAATACGCTAATAGATGGTGGGGAGGTTTGTCGTACTGTTCCTGATGTCGCTGCTGCAATTGAAGACTTGTTAGAGCAGACTAGTAAGTATTCCTGCTCAACTTCTTCGTTTTCTTCTTCTCACAAAGATGCATGGTCAGAGGTCCCCAGCACATACAGGATTTACCCATCTGATCTTTCAGTCCTTGGTGAAGATAATTCCAATCCCCATACCGTTTTTGGGTTATCTAAACACTGGTTAAACAGAAATGACAGAAAGGAAGATGATGGGGAGGGTTCTCAAGACAGACAAGCAGGAATATACGATGGTTTTAGTGAAACACAGACAGAATCTCAGGTTGTTAGTTATGAAGAAGATTTGTCAGGAAGGCAAAGCCTTATAGATAAATACCGAACTCGAAGTAGCACGCAGTGA 2379 0.4018 MSSRISYTYLNLVDICVLDCSYAPQGDKYKVAKRWGHIHIVIKKWFDQSIARRACLNEEFFPVQHGSVSSHKVTRDLTMQHSQEKDIGKLQSAASSGTTDSNVQVSCAEFRDRDHEAMPSEFMSSVSQTRIFAKEADAEPPLQTSGELNLDNIVADDSESDDNDLYLSECRILLVGFEALEMRKLINIVRKGGGSRYMSFNDKLTHIVVGNPTEMEKKDVRSLAALGVIYVVKTSWLEDCDHKKKEVPVLRRHIAYDLLQPKASLVKAVTESTSMDHSKSSSSHQSSHQPESLEKRKEQIKDMDKNGHSFRKANCRTMLQNQLPDNKLSTQGMSQHDFSVQYEKSANVFRGKLFYFSNLFPEEKEPDCSYIKHAASHESLGLVSVDAQIYPTRGEIVQWISQGGGEVISGQAEQIVHYIVECHGVTPMLTGDSKSLSVSSHWIRSCLEAGSLLDVGCHILYSPLPCHVPLPGFERFRFCVSQYEEKDRNLLRNLCFVLGAKFGEKLHKKVTHLLCKFTNGPKYDGARKWGIQSVTCEWIFECVKQNGVVAVDQFLPKEVTAQDREAGLCTVSQFPTQAAQMISDMPSQLSSQSQILRGITDNNVGCGVGNHETNFKKPSVYSKKARLVEEPCLSNKMPSASNSDIHAYGKNFSEDNTLIDGGEVCRTVPDVAAAIEDLLEQTSKYSCSTSSFSSSHKDAWSEVPSTYRIYPSDLSVLGEDNSNPHTVFGLSKHWLNRNDRKEDDGEGSQDRQAGIYDGFSETQTESQVVSYEEDLSGRQSLIDKYRTRSSTQ 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02319 792 Gene3D BRCT domain 467 561 IPR036420 -
Vimu1g02319 792 FunFam Transcription coactivator 390 466 - -
Vimu1g02319 792 Gene3D BRCT domain 7 66 IPR036420 -
Vimu1g02319 792 ProSiteProfiles BRCT domain profile. 344 460 IPR001357 -
Vimu1g02319 792 Gene3D BRCT domain 391 466 IPR036420 -
Vimu1g02319 792 SUPERFAMILY BRCT domain 438 557 IPR036420 -
Vimu1g02319 792 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 23 791 - -
Vimu1g02319 792 SUPERFAMILY BRCT domain 162 248 IPR036420 -
Vimu1g02319 792 MobiDBLite consensus disorder prediction 269 300 - -
Vimu1g02319 792 Gene3D BRCT domain 148 251 IPR036420 -
Vimu1g02319 792 ProSiteProfiles BRCT domain profile. 162 254 IPR001357 -
Vimu1g02319 792 SMART BRCT_7 164 244 IPR001357 -
Vimu1g02319 792 SMART BRCT_7 470 546 IPR001357 -
Vimu1g02319 792 MobiDBLite consensus disorder prediction 269 288 - -
Vimu1g02319 792 FunFam Transcription coactivator 144 254 - -
Vimu1g02319 792 MobiDBLite consensus disorder prediction 737 792 - -
Vimu1g02319 792 Pfam twin BRCT domain 477 538 IPR001357 -
Vimu1g02319 792 Pfam BRCA1 C Terminus (BRCT) domain 164 240 IPR001357 -
Vimu1g02319 792 SUPERFAMILY BRCT domain 392 462 IPR036420 -
Vimu1g02319 792 CDD BRCT_TopBP1_rpt2_like 471 546 - -
Vimu1g02319 792 MobiDBLite consensus disorder prediction 755 774 - -
Vimu1g02319 792 ProSiteProfiles BRCT domain profile. 473 556 IPR001357 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02319 12 790 Core DNA Replication Machinery Family AT1G77320 40.942 9.47e-175 527
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02319 K10728 - gmx:100804966 1042.34