Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02312 TTGTATAGGTCGAGGATTTGCGTGAAGAATCTTCCCAAACATGTTGCGGAGGATGAACTACGGGAATTCTTTTCTGAGAAAGGAATAATCACTGACGTCAAGCTCATGCGTACCAAAGACGGTAAGAGTAGGCAATTTGCGTTTATAGGGTATCGAACAGAAAATGAAGCTCATGAAGCCATTCGATATTTCAATAATTCTTTCCTTCGCACATCTAAAATTACATGTGAGGTAGCTCGAAAACTTGGGGATGAAAATCTTCCTCGTCCATGGAGTCGCCATTCGAAGAAGAAAGACGACAAAGAGACTGTGCCGGATGTGGGGAAACCTGCTAGAGCTAAGGGCAGGAAAGAAAATTTGAAGAATGGTGTGGATGTTGATGACCCGCAGCTTCAAGATTTTCTTCAGGTCATGCAGCCTCGGGTTAACTCTAAGATGTGGGCAAATGATACCTCCGGTTTGACCAGTGTTGACAACAACCGAGGAGTCTCAAATAAGGATAATGAAGGTGCATCAGTTTCAACTGATGACAGTGGCTCATTGGAAGATGCATTTCTGGATATTTCCGAACCCAGCCGCAAGTCACTTGAGCCTGAACGTGACGAGGTCATTTCAGATATGGATTATTTCAAGAGTAAGGTGACGAAAGAGTGGTCTGATTCTGAAAGTAGTGATGAAGATGATGACGACAATGATGATAATGATGCCTCATCTGATGACAAAGATGATAATAGTGATGTTAATGAAGATGGAAAAATAAGTCATCCAAGAAATGATACTCGAGAGGTAGACGTAGAGGGCAAAGAAGATACTAGTAGAGAGAAGGTTACCCATGAAAAATCTCAAGTAACTGTGACTGAGCATGGGGGCCAATTATCAAAAACAGAAGACGTGCAAGGAGTTTTTGAGTCCTGTCGGTTGTTTGTCCGTAATCTGCCATACACGACCACCGAGGAGGAACTGGAAGAACATTTCAATCACATTGGTAGTATCTCACAGGTTCATCTAGTTATTGATAAAGATACAAAACGATCCAAAGGAATAGCATATATTCTTTATACAGCTCCAGAATTTGCAGAGAGGGCTTTGAAAGAGTTAGACAATTCAATCTTTCAAGGAAGATTGTTGCATGTTATGCCAGCCTTACAAAGACATTCAGAGAATCAAGAGAACAATGTTTTGAAGGACCAAAGCTCCAAAACCCTCAAAAAACAGAGAGAGGAAAAAAGGAAAGCAAATGAAGCTAGTGGAGATACTAGAGCGTGGAATAGTCTGTTCATGCGCCCTGATACAATTGTGGAAAACATTGCACGGAAATATGGTGTAGATAAAAGTGATTTACTTGACGGAGAAGCTGACGATCTTGCTGTACGTATTGCTCTGGGAGAGACTCAAGTGATTTCAGAAACAAAAAATGCATTTAAAAATGCTGGTGTAAATGTTGAGGCCTTGGAGGAACTTGCTATTAAAAAAATAGATGGCTTAAAAAGAAGTAATCATGTGCTTTTGGTGAAGAACTTGCCTTATGGTTCCACAGAAAATGAACTTGCAAAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAGTTCTCCCTCCAACAAAGACATTGGCACTGGTATATTTTCTCCTCCTTTATGACACTTTGACTGTAATATTTCTGTTGTACGGGAATCTGAATATACTGCTGGTTGTTTTCCTCGAACCAGCAGAAGCTCGAGCAGCTTTTAGAGGTTTAGCTTACAAGCGTTATAAGGATGCTCCACTATACTTGGAGTGGGCTCCTTCCAATATTCTTAGCCAAAGTTCAACATCAAAAAATGATGACATGAATGGTGCAATTGGTGAAAATGATGCCAAGAGGCAGATATTGGAGCAAAACGTGGAAAGAATAACAGATGTTGATATTGACCCAGACAGAGTAGAGGCTCGGTCCTTATTTGTCAAGAACATAAATTTCAAGACAACAGATGAAAATCTGAGGAAACATTTTAGTGAACTCATGAAAGAGGGAAGAATTTTGAGTGTGAAGGTGAAGAAGCATTTGAAAAATGGGAAAAATGTTTCTATGGGGTTTGGATTCATTGAGTTTGACTCCCCTGAAACTGCTACAAATGTTTGCAGAGATTTGCAGGGGACAGTTTTGGACAGCCATGCTCTTATTTTACAACCTTGTCATGTCAAGAATGATGCGCAGAAACAAAAGACAATTGAGAAGGATAAGAGTTCAACAAAATTGCTCGTAAGAAATGTTGCTTTTGAGGCAACAGAGAAGGATCTAAGACGATTGTTTAGCCCCTTTGGCCAGATTAAAAGCTTAAGGTTGCCGATGAAGTTTGGAAGCCATAGAGGCTTTGCTTTTGTAGAGTATGTTACTCAGCAGGAGGCACAAAATGCGCTCAAAGCACTTTCAAGCACCCATCTCTATGGGAGACATCTGGTAATAGAGAGAGCGAAAGAAGGTGAGAGTTTGGAAGAACTGCGAGCACGAACAGCTTCTCAATTTAGTGACGGCCACAATGGATTTCAAGGTGCTATTAAATTATCCAAGAAAAGAAAGGACGTTGACATCTTAGATGAAGGGAAGATGAAGTTTGGAAGATTTGATGACTAG 2613 0.4038 MYRSRICVKNLPKHVAEDELREFFSEKGIITDVKLMRTKDGKSRQFAFIGYRTENEAHEAIRYFNNSFLRTSKITCEVARKLGDENLPRPWSRHSKKKDDKETVPDVGKPARAKGRKENLKNGVDVDDPQLQDFLQVMQPRVNSKMWANDTSGLTSVDNNRGVSNKDNEGASVSTDDSGSLEDAFLDISEPSRKSLEPERDEVISDMDYFKSKVTKEWSDSESSDEDDDDNDDNDASSDDKDDNSDVNEDGKISHPRNDTREVDVEGKEDTSREKVTHEKSQVTVTEHGGQLSKTEDVQGVFESCRLFVRNLPYTTTEEELEEHFNHIGSISQVHLVIDKDTKRSKGIAYILYTAPEFAERALKELDNSIFQGRLLHVMPALQRHSENQENNVLKDQSSKTLKKQREEKRKANEASGDTRAWNSLFMRPDTIVENIARKYGVDKSDLLDGEADDLAVRIALGETQVISETKNAFKNAGVNVEALEELAIKKIDGLKRSNHVLLVKNLPYGSTENELAKMFGKFGSLDKIVLPPTKTLALVYFLLLYDTLTVIFLLYGNLNILLVVFLEPAEARAAFRGLAYKRYKDAPLYLEWAPSNILSQSSTSKNDDMNGAIGENDAKRQILEQNVERITDVDIDPDRVEARSLFVKNINFKTTDENLRKHFSELMKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSPETATNVCRDLQGTVLDSHALILQPCHVKNDAQKQKTIEKDKSSTKLLVRNVAFEATEKDLRRLFSPFGQIKSLRLPMKFGSHRGFAFVEYVTQQEAQNALKALSSTHLYGRHLVIERAKEGESLEELRARTASQFSDGHNGFQGAIKLSKKRKDVDILDEGKMKFGRFDD 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02312 870 CDD RRM4_RBM19_RRM3_MRD1 500 595 - -
Vimu1g02312 870 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 74 IPR000504 GO:0003723
Vimu1g02312 870 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 646 720 IPR000504 GO:0003723
Vimu1g02312 870 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 502 542 IPR000504 GO:0003723
Vimu1g02312 870 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 746 813 IPR000504 GO:0003723
Vimu1g02312 870 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 377 IPR000504 GO:0003723
Vimu1g02312 870 MobiDBLite consensus disorder prediction 386 416 - -
Vimu1g02312 870 FunFam Nucleotide/nucleic acid binding protein 640 735 - -
Vimu1g02312 870 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 81 IPR000504 GO:0003723
Vimu1g02312 870 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 644 727 IPR000504 GO:0003723
Vimu1g02312 870 SMART rrm2_1 745 816 IPR003954 GO:0003676
Vimu1g02312 870 SMART rrm2_1 306 379 IPR003954 GO:0003676
Vimu1g02312 870 SMART rrm2_1 5 77 IPR003954 GO:0003676
Vimu1g02312 870 SMART rrm2_1 645 725 IPR003954 GO:0003676
Vimu1g02312 870 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 500 596 IPR000504 GO:0003723
Vimu1g02312 870 MobiDBLite consensus disorder prediction 148 179 - -
Vimu1g02312 870 FunFam RNA-binding motif protein 19 3 102 - -
Vimu1g02312 870 Gene3D - 640 740 IPR012677 -
Vimu1g02312 870 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 383 IPR000504 GO:0003723
Vimu1g02312 870 MobiDBLite consensus disorder prediction 214 291 - -
Vimu1g02312 870 MobiDBLite consensus disorder prediction 187 201 - -
Vimu1g02312 870 MobiDBLite consensus disorder prediction 85 124 - -
Vimu1g02312 870 SUPERFAMILY RNA-binding domain, RBD 633 732 IPR035979 GO:0003676
Vimu1g02312 870 SUPERFAMILY RNA-binding domain, RBD 740 830 IPR035979 GO:0003676
Vimu1g02312 870 FunFam Multiple RNA-binding domain-containing protein 1 738 844 - -
Vimu1g02312 870 CDD RRM6_RBM19_RRM5_MRD1 744 818 - -
Vimu1g02312 870 MobiDBLite consensus disorder prediction 221 244 - -
Vimu1g02312 870 CDD RRM5_RBM19_like 645 723 IPR034423 -
Vimu1g02312 870 Gene3D - 493 619 IPR012677 -
Vimu1g02312 870 Gene3D - 741 840 IPR012677 -
Vimu1g02312 870 SUPERFAMILY RNA-binding domain, RBD 304 548 IPR035979 GO:0003676
Vimu1g02312 870 Coils Coil 395 415 - -
Vimu1g02312 870 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 744 820 IPR000504 GO:0003723
Vimu1g02312 870 SMART rrm1_1 745 816 IPR000504 GO:0003723
Vimu1g02312 870 SMART rrm1_1 645 723 IPR000504 GO:0003723
Vimu1g02312 870 SMART rrm1_1 5 77 IPR000504 GO:0003723
Vimu1g02312 870 SMART rrm1_1 501 564 IPR000504 GO:0003723
Vimu1g02312 870 SMART rrm1_1 306 379 IPR000504 GO:0003723
Vimu1g02312 870 Gene3D - 2 124 IPR012677 -
Vimu1g02312 870 Gene3D - 211 393 IPR012677 -
Vimu1g02312 870 MobiDBLite consensus disorder prediction 85 127 - -
Vimu1g02312 870 MobiDBLite consensus disorder prediction 397 416 - -
Vimu1g02312 870 MobiDBLite consensus disorder prediction 148 201 - -
Vimu1g02312 870 CDD RRM1_MRD1 4 79 - -
Vimu1g02312 870 MobiDBLite consensus disorder prediction 245 282 - -
Vimu1g02312 870 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 306 407 - -
Vimu1g02312 870 FunFam - 275 422 - -
Vimu1g02312 870 SUPERFAMILY RNA-binding domain, RBD 5 84 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02312 Vimu-Chr1 33649744 33657761 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02312 618 860 Eukaryotic Initiation Factors Gene Family AT4G34110 28.235 2.70e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02312 K14787 - gmx:100798742 1333.93