Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02311 ATGAGAAACCCTTCATCAACATCAACAACCAAGAACAAGAAGAGTGGTGGTGGTAACAGCACTACCACCAGCTACAATAGCAACAACAATAACATTAGTAGCAGTAATAATAATGTTTCCAACACCAACACTCCATGCTGCAGCAAGGTTGGCTTGAAGAGAGGACCATGGACACCAGAAGAAGATGAGGTGTTAGCCAATTACATCAAGAAAGAAGGAGAAGGCCGTTGGAGAACGCTCCCCAAGCGTGCTGGCCTTCTCCGCTGCGGCAAAAGCTGCCGTCTCCGCTGGATGAACTACCTCCGCCCCTCCGTCAAACGCGGCCACATCGCCCCTGATGAGGAAGATCTCATCCTCCGCCTCCACCGCCTCCTTGGCAACCGGTGGTCTTTGATTGCTGGGAGGATTCCTGGAAGAACAGATAATGAAATAAAGAACTATTGGAACACCCATCTTAGTAAAAAGCTCATTAGCCAAGGGATTGATCCCAGAACTCACAAACCTCTCAACCCACCATCCATGAATATCAATATTCCTTCTTCTTCTACTCCTTCTACTACTTTTACTGTTACTCCACCCTCTATGCCTCCTCCAATGATCATCACCAGCCACAACCCTTGCCATGATCTCACTGTTGTTAATCAAGGAATTCATGCGATTCATCATTTGGGTCAACACCTCCAACCTCCCGTTTCAAACCCCTTTGATAATAACAACATTAGCAATCAAGTGGCTGCTGTCACTGATGATGTTTCTGCAATGGGGTTCATGGACAGTGAGGATTGCAACGATGATATCAACATCAATTATTACTCGGATGATGTTTTCTCTTCCTTCCTCAACTCCTTGATCAACGAGGATGCTTTTGCGTCGCAGCAGCACCACGTGCAAACAGAGCTCCCCAGTGAGCGTTGCATTCCACTGCCGTGTGATGATCGTGTGGATGATCCTCTGGTTTCAATCACAACTGCTTCTACATCGCAGGGTTACGATGATGACCTTGGGGTTCTCTGGGAATCATCTCTCGTGCCTTCTACTACTTTCACCCATCACGTTAACGACCCCATCATCAAGATGGCTCATGATCACCATCACCACAATCAATAG 1107 0.4715 MRNPSSTSTTKNKKSGGGNSTTTSYNSNNNNISSSNNNVSNTNTPCCSKVGLKRGPWTPEEDEVLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNPPSMNINIPSSSTPSTTFTVTPPSMPPPMIITSHNPCHDLTVVNQGIHAIHHLGQHLQPPVSNPFDNNNISNQVAAVTDDVSAMGFMDSEDCNDDININYYSDDVFSSFLNSLINEDAFASQQHHVQTELPSERCIPLPCDDRVDDPLVSITTASTSQGYDDDLGVLWESSLVPSTTFTHHVNDPIIKMAHDHHHHNQ 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02311 368 CDD SANT 56 101 IPR001005 -
Vimu1g02311 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 156 IPR017930 -
Vimu1g02311 368 ProSiteProfiles Myb-like domain profile. 49 101 IPR001005 -
Vimu1g02311 368 SUPERFAMILY Homeodomain-like 51 148 IPR009057 -
Vimu1g02311 368 Gene3D - 51 107 - -
Vimu1g02311 368 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 44 177 - -
Vimu1g02311 368 Pfam Myb-like DNA-binding domain 112 152 IPR001005 -
Vimu1g02311 368 Pfam Myb-like DNA-binding domain 54 101 IPR001005 -
Vimu1g02311 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 101 IPR017930 -
Vimu1g02311 368 MobiDBLite consensus disorder prediction 161 188 - -
Vimu1g02311 368 FunFam transcription repressor MYB5-like 111 177 - -
Vimu1g02311 368 Gene3D - 111 173 - -
Vimu1g02311 368 ProSiteProfiles Myb-like domain profile. 102 152 IPR001005 -
Vimu1g02311 368 SMART sant 106 154 IPR001005 -
Vimu1g02311 368 SMART sant 53 103 IPR001005 -
Vimu1g02311 368 CDD SANT 112 152 IPR001005 -
Vimu1g02311 368 FunFam Myb transcription factor 51 107 - -
Vimu1g02311 368 MobiDBLite consensus disorder prediction 170 188 - -
Vimu1g02311 368 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02311 Vimu-Chr1 33630194 33631444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02311 39 286 MYB Transcription Factor Family AT3G13540 56.452 4.69e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu1g02311 Myb_DNA-binding 2.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02311 K09422 - gmx:100797847 472.241