Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02310 ATGGATCTCAGCTACGTTGAGACCTATCCCTGGGATACTTCATCTTGCAGAGACCCTGTTGTTGATAAGGAGCACTGTTGCCAAGCTTTGCTCAGTGTGATTGGCATGGGGTTGGCCCAACACCTCAAAAACACTTCCTACTTTCAACTTCCTGATGAAAACACTTCCTCCATCTGCTTGTTAGATTTCCAAGCCAAAGTCTCAGCCTTGTCAATTAACTCCTCTTTGGTCCCTTATTGTTTTCCTAGAGCTTCTGAGTTTGTTACCAACACTTCAACTTGTGCAGGAATCATAACTGTAGATGATTGGAAGAGTAAAGTGGGTATTATTAGCCCCTTGGATGCTTCTTGCAATGGGGACATGAGTGATCAAACCCGTTGCAGCCTTTGTACTGATGCTGGTCTCAAAGTGACTTCCCACCTCAATAGTTTGGACCCAAATGGCACAAAGTGCTTTTACTTCACAGTTTTGTATGCCTCGGCTATTGTTAACCAGTATGGTCCAACAAATTTGGGCACTGCTGGTTGCATACTGGGCTTGCCGCTGTCTGTGAAAGGTTCATCGAATAAAAAACAAGAGCTGAAACTTGTTTTTGGGTTGGTGGGTGCGTTTACTGGTGTTGTGCTTGGTTTTGTGTTGATTGTGGTGTACAGAAAGTGGGATAAGAGAAGGAAGGAAGAGAAGTATCACAGGTCGGTTGAAAACGGTGTGAGGAACAGTGTTTTGCCTAATACTGGTGCGAAATGGTTTCGCATATCGGAGCTTGAGCGAGCCACTGGTAAATTTTCTCAGAAGAATATGGTTGGCCAAGGTGGTGATGGGGTTGTGTACAAAGGGACTCTTTCAGATGGCACTTTGGTTGCGGTAAAGGAAATTTTTGATTTGGAGACAAAAGGGGATGAAGATTTCTGCTATGAAGTGGAGATCATAAGCAAAATAAAGCACAGGAATCTTCTTCCTCTTCGGGGCTGTTGCATTTCAAGTGATAATTTGAAAGGCAAGAGAAGGTTAACATGGCCACAAAGGAAGAACATAATCCTTGATGTGGCTAAGGGGCTTGCTTATTTGCATTATGAGATCAAACCCCCAATTTATCACCGTGACATAAAGGCTACCAACATACTTTTGGATTCAAAAATGAAAGCAAAAGTGTCAGATTTTGGGTTGGCGAAGCAAGGGAATGATGGCCAGTCTCATCTCACAACAAGAGTTGCTGGCACGTATGGTTATTTGGCACCAGAATATGCTCTTTATGGGCAACTGACAGAGAAGAGTGATGTGTACAGTTTTGGCATTGTGATTCTTGAAATCATGAGTGGAAGAAAAGTGCTTGATACCATGAATTCATCGGTTGTTTTGATCACGGATTGGGCATGGACACTGGCAAAATCAGGGAACATGGAAGACATTTTTGACCAGTCAATAAAGGAAGAAGGACCAGAGAAGATCATGGAAAGGTTTGTTCTTGTGGGAATACTCTGTGCTCATGCAATGGTGGCTTTAAGACCTACTATTGCTGAGGCCCTTAAGATGTTAGAGGGTGACATTGACATACCCCAATTACCTGACAGACCAGTGCCATTGGGTCAAGAGGCCTTCCAATCTTCTTTGCAGCATGGTTTGCAAAGTAGCGTAGGATCATCCTCCTATTTTTCTTCATATCTTGCATCCTATTCATCAAGCACTAGAACAACATAG 1698 0.4323 MDLSYVETYPWDTSSCRDPVVDKEHCCQALLSVIGMGLAQHLKNTSYFQLPDENTSSICLLDFQAKVSALSINSSLVPYCFPRASEFVTNTSTCAGIITVDDWKSKVGIISPLDASCNGDMSDQTRCSLCTDAGLKVTSHLNSLDPNGTKCFYFTVLYASAIVNQYGPTNLGTAGCILGLPLSVKGSSNKKQELKLVFGLVGAFTGVVLGFVLIVVYRKWDKRRKEEKYHRSVENGVRNSVLPNTGAKWFRISELERATGKFSQKNMVGQGGDGVVYKGTLSDGTLVAVKEIFDLETKGDEDFCYEVEIISKIKHRNLLPLRGCCISSDNLKGKRRLTWPQRKNIILDVAKGLAYLHYEIKPPIYHRDIKATNILLDSKMKAKVSDFGLAKQGNDGQSHLTTRVAGTYGYLAPEYALYGQLTEKSDVYSFGIVILEIMSGRKVLDTMNSSVVLITDWAWTLAKSGNMEDIFDQSIKEEGPEKIMERFVLVGILCAHAMVALRPTIAEALKMLEGDIDIPQLPDRPVPLGQEAFQSSLQHGLQSSVGSSSYFSSYLASYSSSTRTT 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02310 565 Gene3D Phosphorylase Kinase; domain 1 222 328 - -
Vimu1g02310 565 Pfam Protein kinase domain 263 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02310 565 SMART serkin_6 262 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02310 565 PANTHER OS01G0750732 PROTEIN 14 534 - -
Vimu1g02310 565 FunFam Receptor-like serine/threonine-protein kinase At4g25390 227 339 - -
Vimu1g02310 565 ProSiteProfiles Protein kinase domain profile. 262 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02310 565 Gene3D Transferase(Phosphotransferase) domain 1 329 518 - -
Vimu1g02310 565 ProSitePatterns Serine/Threonine protein kinases active-site signature. 364 376 IPR008271 GO:0004672|GO:0006468
Vimu1g02310 565 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 325 520 - -
Vimu1g02310 565 SUPERFAMILY Protein kinase-like (PK-like) 247 528 IPR011009 -
Vimu1g02310 565 Pfam SPARK 1 151 IPR043891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02310 Vimu-Chr1 33608934 33610700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02310 1 534 Receptor kinase-like Gene Family AT1G11050 51.130 0.0 549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vimu1g02310 Pkinase 7.7e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02310 - - gmx:100820563 924.85