Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02309 ATGGAAAACCACGTAAGGTTTCTCCTTCTGTTCCTCTTCATCACCATTCTCTTACCAGCTGCTGCTCCTTCATCTTGTCCAATCAACTTCACCTACGTTCAAACCTTCCCTTGGAACACTTCAACTTGCACAAACACAACCAACAAACAACCTTGTTGCTCAACCCTCAAAACCATCTTCCACATAGGCCTCTCCCAACATCTCAAACAAACATCGCTTTTTCAACTTCCCAATGAAAACACTTCCTCCATTTGCTTATCAGATTTCCAAGAAAAACTCACAACCTTGTCAATTCACCCCTCTCTGGTCCCTTCTTGCTTCCCTAACCCCTCTCAGTTTGTCACAAACTCTTCCACATGTGCAGGTGTTGTGACTTCTCGAGATTGGGAACAGAAGGTGAACTCGGTTAGACTTATCCCGATGCAAACTTTATGCAAAGACCTTGATGACCAAACTAGCTGCAACAATTGCATAGCAGCAAGCTTGAAAGTGGCTATTCAGCTTACTATTGATAACCCAAATGCCACTGAGACGGGTTGTTTTTCGTTTGCATCGCTGTATGCTGCAGCGGTTGTTAATCCAAAAGGCACAACTGATGTCACCACGATCGGTTGCATAATGGGTGTGCAACTTTCTAGTGAAGTGGCAAAAGGGTCATCAAAAAAGAGAGGAAAAGTTCTTGAGGTGGTTTTTACGTTATTGGGTGCTGTTGTTGGGGTTATTATTGTTTTTGTGCTGATGGTGGTTATGTACAGGAAGTGGGAAAAGAGAAGGAAGGAAAATGTTTATCACAGGGAAATTGAAAACGGTATCAGGAACAGTGTTTTGACGAACACTGGTGCAAAATGGTTTCACATATCGGAGCTTGAACGTGCCACCAACAGATTTTCGAGGAGGAATAAGGTTGGTCAAGGTGGTGATGGGGTTGTGTACAAAGGGAAGCTTGCGGATGGCACTTTGATTGCTGTTAAGGAGAATTTGAATTTGCAAAGTAAAGGGGATGAAGAGTTCTGCTATGAGGTGGATATCATAAGCAAAATAAAGCACAGGAACCTTCTTGCTCTTCGTGGTTGTTGCATTTCAAGTGATAATTTCAAAGGTAAGAGACGGTTTCTGGTTTATGATTTCATGCCAAATGGCAACCTCAGTTATCAACTGTCACTTGGTGGATTAACATGGCCACAAAGGAAGAACGTGATCCTTGATGTGGCTAAGGGGCTTGCTTATTTGCACTATGAAATCAAGCCACCAGTTTATCATCGTGATATAAAGGCTACAAACATACTTTTGGACTCCAAAATGAATGCTAAATTGGCAGATTTTGGGTTGGCCATGCAAGGTAGTGAGGATCAGTCTCCTCTCACCACAAGGGTTGCTGGCACATATGGTTATGTGGCACCCGAGTATGCTTTATATGGGAAACTCACTGAGAAGAGTGATGTGTACAGTTTTGGTATTGTGATTCTGGAAATCATGAGTGGAAGAAAAGTGCTTGATACTTTGAATTTATCTGCAGATGCAATCACAGATTGGGTGTGGACACTGGCAGAATCGGGAAAGATGATGGAAATTTTTGATGAGTCAATAAGAGAAGGACCCTGGAAAGTTATGGAAAGGTTTGTTCATGTGGGAATGCTCTGTGCTCATGCAATGGCTGCTTTGAGACCTACCATTGCTGAGGCTCTTAAGATGTTAGAGGGTGACACTGACGTTCCTAAATTACCAGATAGGCCTGTGCCTTTGGGTCATGCGTCCTTTCAATCTTCTCTGTTGCATGGATTGCAAGGAAGCGGAAGATCTATGCAACATGTTTCATCCTATTCATCAGTACAATATTGA 1839 0.4274 MENHVRFLLLFLFITILLPAAAPSSCPINFTYVQTFPWNTSTCTNTTNKQPCCSTLKTIFHIGLSQHLKQTSLFQLPNENTSSICLSDFQEKLTTLSIHPSLVPSCFPNPSQFVTNSSTCAGVVTSRDWEQKVNSVRLIPMQTLCKDLDDQTSCNNCIAASLKVAIQLTIDNPNATETGCFSFASLYAAAVVNPKGTTDVTTIGCIMGVQLSSEVAKGSSKKRGKVLEVVFTLLGAVVGVIIVFVLMVVMYRKWEKRRKENVYHREIENGIRNSVLTNTGAKWFHISELERATNRFSRRNKVGQGGDGVVYKGKLADGTLIAVKENLNLQSKGDEEFCYEVDIISKIKHRNLLALRGCCISSDNFKGKRRFLVYDFMPNGNLSYQLSLGGLTWPQRKNVILDVAKGLAYLHYEIKPPVYHRDIKATNILLDSKMNAKLADFGLAMQGSEDQSPLTTRVAGTYGYVAPEYALYGKLTEKSDVYSFGIVILEIMSGRKVLDTLNLSADAITDWVWTLAESGKMMEIFDESIREGPWKVMERFVHVGMLCAHAMAALRPTIAEALKMLEGDTDVPKLPDRPVPLGHASFQSSLLHGLQGSGRSMQHVSSYSSVQY 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02309 612 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 377 573 - -
Vimu1g02309 612 FunFam Receptor-like serine/threonine-protein kinase At4g25390 261 376 - -
Vimu1g02309 612 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 73 585 - -
Vimu1g02309 612 ProSiteProfiles Protein kinase domain profile. 296 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02309 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Vimu1g02309 612 Gene3D Transferase(Phosphotransferase) domain 1 377 573 - -
Vimu1g02309 612 SMART serkin_6 296 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02309 612 SUPERFAMILY Protein kinase-like (PK-like) 275 566 IPR011009 -
Vimu1g02309 612 Pfam SPARK 22 176 IPR043891 -
Vimu1g02309 612 Gene3D Phosphorylase Kinase; domain 1 257 376 - -
Vimu1g02309 612 Pfam Protein kinase domain 297 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02309 Vimu-Chr1 33596727 33598687 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02309 20 595 Receptor kinase-like Gene Family AT1G11050 47.533 4.35e-180 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vimu1g02309 Pkinase 2.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02309 - - gmx:100798901 952.97