Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02306 ATGGATAGCCCAGTGAAAACATCGTGCAAAGGGGACCTTATAGACCAAACTCTCTGCAGTAATTGCATTCAAGTTGCTACAGAATTGGTTTCCAATCTGACACGTATTGACCCACATGCTAATGCCAAATGTTTTTACTATACAGTTTTATATGTTGCAGCTGTGGCTAATCCGTTTGGGACGACAGATCTAAGCACTACTGGATGCATACTTGGCCTGACACAACCATCTAGTGCAGTAACAAGAGGGACATCAAACAAAAGAAGAAAAAAGATCAAGCTTGTTATTACGTTGTTAGGTGGTGTTGTTGGTGTTGTGTTTGTTTTTGCTCTTGCTCTGATGGTCGTGTACAGGAAGTGGGATAAGAGAAGGAAGAAAAATGTTCATCGCAGGGAAGTTGAAAACGAGGTTAGTGCTGGTGTTTTACCTCGTACAGGTGCTAAATGGTTTCACATATCAGAGCTGGAACGTGGCACGAGTAAATTTTCAGAGAGTAATGTGATTGGGAAAGGTGGTCATGGGGTTGTGTACAAAGGGACTCTTTCAGATGGAACTTTGGTTGCCGTTAAGGAAATTTTTGGTTTGGAAAGTAAAGGGGATGAAGAGTTCTGCTATGAAGTGGAGATCATAAGCAAAATAAAGCACAGGAATCTTCTTCCTCTTCGGGGATGTTGTGTTACAAGTGATAATTTGAAAGGTAAGAGGAGGTTTTTGATTTATGAGTTTATGCCTAATGGAAGCCTGAATGATCATTTGTGTTCTTATGGTGCTAATAGGCTAACATGGCCACAAAGGAAGAACATAATCCTTGATGTGGCTAAGGGGCTTGCTTATTTGCACTATGAAATCAAACCCCCAATTTATCATCGTGACATAAAAGCTACCAACATACTTTTGGATTCCAAAATGCATGCTAAATTGGCAGACTTTGGGTTGGCCAAGCAGGGTAATGATGGTAAATCTCATCTAACTACAGGGGTTGCTGGCACATATGGTTATGTAGCACCAGAATATGCACTGTATGGGCAACTAAGTGAGAAAAGTGATGTGTACAGTTTCGGTATAGTGATTCTAGAAATCATGAGTGAAAGAAAAGTGCTTGATACTTTGAATTCATCCACGGATTCAGTCACAGATTGGGTATGGGCACTTGCAGAAACTGGAAAGATGGAGGAAATTTTTGAGGAGTCAATAAGAGAAGAAGGGTCGGTGAAAAGTATGGAAAGGTTTGTTTATGTTGGAATGCTATGTTCTCATTTGGTAGTGGCGTTTAGACCTACTATTGTTGAGGCCCTTAAGATGTTAGAAGGTGAGATTGACATTCCTGAATTACCTGAGAGGCCAGTGCCACTTGGCCATGCGTCCTTTCAATCTTCTGTGTTGCATGGTTTGCAGAGAAGTGGTTGA 1407 0.4108 MDSPVKTSCKGDLIDQTLCSNCIQVATELVSNLTRIDPHANAKCFYYTVLYVAAVANPFGTTDLSTTGCILGLTQPSSAVTRGTSNKRRKKIKLVITLLGGVVGVVFVFALALMVVYRKWDKRRKKNVHRREVENEVSAGVLPRTGAKWFHISELERGTSKFSESNVIGKGGHGVVYKGTLSDGTLVAVKEIFGLESKGDEEFCYEVEIISKIKHRNLLPLRGCCVTSDNLKGKRRFLIYEFMPNGSLNDHLCSYGANRLTWPQRKNIILDVAKGLAYLHYEIKPPIYHRDIKATNILLDSKMHAKLADFGLAKQGNDGKSHLTTGVAGTYGYVAPEYALYGQLSEKSDVYSFGIVILEIMSERKVLDTLNSSTDSVTDWVWALAETGKMEEIFEESIREEGSVKSMERFVYVGMLCSHLVVAFRPTIVEALKMLEGEIDIPELPERPVPLGHASFQSSVLHGLQRSG 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02306 468 SUPERFAMILY Protein kinase-like (PK-like) 147 451 IPR011009 -
Vimu1g02306 468 CDD STKc_IRAK 168 437 - -
Vimu1g02306 468 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 243 443 - -
Vimu1g02306 468 FunFam Receptor-like serine/threonine-protein kinase At4g25390 127 242 - -
Vimu1g02306 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 287 299 IPR008271 GO:0004672|GO:0006468
Vimu1g02306 468 ProSitePatterns Protein kinases ATP-binding region signature. 168 190 IPR017441 GO:0005524
Vimu1g02306 468 Gene3D Phosphorylase Kinase; domain 1 121 242 - -
Vimu1g02306 468 Gene3D Transferase(Phosphotransferase) domain 1 243 441 - -
Vimu1g02306 468 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 69 451 - -
Vimu1g02306 468 ProSiteProfiles Protein kinase domain profile. 162 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02306 468 SMART serkin_6 162 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02306 468 Pfam Protein kinase domain 163 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02306 Vimu-Chr1 33569067 33570473 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02306 5 465 Receptor kinase-like Gene Family AT1G11050 47.619 8.12e-149 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vimu1g02306 Pkinase 1.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02306 - - vra:106763645 789.645