Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02305 ATGGATAAGCAAGTGAGGCTATTCCTTCTTCATTTGATGTCCCTCTTGACAGTGTTCACACATGGAGCTGCATCTTCAGCATGCCCCATGGATCTCTCCTACGTTGCTTCCATTCCCTGGAACACCTCAATATGCAGAGGCCATATTGACCAGGATCACTGTTGCGACACGCTAAGGAGTGTCTTTGCCATTGGCCTCGCTGAGCTCCTCAAAGATACTGATTTATTTTACCTTCCTAATGCAAACACTTCCTCCGCTTGCTTACATGATTTCACACGCAGGCTTTCAGCCTTGTCCATCAGTCAAAACATGGTCCCTCTTTGCTTCCCCAACCCATCACGCTTTGTTTTCAACTCTTCTGCTTGTGGGGGTATCAGAACCACGAAAGATTGGAACATTAGTGTGGACCGGAATACCCCTTTGTACTCAACTTGCAATAGGGACCTCAAAGACAAAACTCGTTGCAGAGTTTGCTCTGAGGCTGCTCACACACTCACAGAGAAGCTCACAGCTCTTTACCCTAATGCTGACGCCAAAAGGTGTTTTTACTACATTGCGCTGTACGCTGCAGCTGTTGTTAACCCGTTTGGTACAACCGATATAAGCACCACTTCTTGCATACTTTGCCTGGAGCATTATGTGGTGGTACACGGGTCAAGTCATGGAGTAGAAGAACTGTGGAAGCTTATTTTTGCGTTGTTGGGTGTTGTTATTGGTGTTGTTCTTGCTTTTGTGATGATTTTTGTGTACAGGAAGTGGGATAAGAGAAAGAGGCAGAGTGTTTATCACAGGGAGATCGAGAACAAGGTCAGGGCATGTGTTTTGCCTAATGCTGGGGCAAAATGGTTTCGTGTAGAGGAGCTTGAGCGTGCAACTGAGAGATTTTCGCGGCAGAATGTGGTTGGTCAAGGTGGAGATGGAGTTGTGTATAAAGGTGTTCTTTCTGATGGTGCTGTGGTTGCTGTTAAGGAGATTTATTATTTGGAGGGTAAAGGGGATGAAGAGTTCTGCTATGAAGTGGAGATCATAAGCAAAATAAAGCACAGGAATCTTCTTGCTCTTCGGGGCTGTTGCATTTCAAGTGATGATTTGGAAGGTAAGAGAAGGTTTTTGATTTACGATTTTATGCCTAATGGGAGTCTCAGTGACCAAATGTGTTCAGATGGTGCTAATAGGCTAACATGGCCACAAAGGAAGAACATAATCCTTGATGTGGCTAAGGGGCTTGCTTATTTGCATTATGAAATCAAACCCCCAATTTATCATCGTGACATAAAGCCTACCAACATACTTTTGGACTCCAAAATGAATGCTAAATTGGCAGATTTTGGGTTGGCCAAGCAAGGTTCTGAGGATGAGTCTCATCTCACCACAAGGGTTGCTGGCACATATGGTTATGTAGCACCAGAGTATGCTCTCTATGGGCAACTGACTGAGAAAAGTGATGTCTATAGTTTCGGTATTGTTATTCTTGAAATCATGAGTGGAAGGAAGGTGCTTGATGTTTTGGATTCATCTGCTTGTTTAATTACAGATTGGGTATGGACAATGACAGAATCTGGAAAGATGGAGGAAGTTTTTGATCTGTCAATAAGAGAAGGGCAAGAAAAAATTATGGAAAGGTTTGTTCTTGTTGGAATGCTATGTTCTCATTTGGCAGTGGCATCAAGGCCTACTATTGTTGAGGCCCTTAAGATGTTAGAAGGAGTCATTGACATTCCCAAATTACCTGAGAGGCCAATGCCACTGGGTCATGAGTCTTTCCAATCTTCTTTGTTGCATGGTTTACAAAGAAGTGCTTAA 1803 0.4354 MDKQVRLFLLHLMSLLTVFTHGAASSACPMDLSYVASIPWNTSICRGHIDQDHCCDTLRSVFAIGLAELLKDTDLFYLPNANTSSACLHDFTRRLSALSISQNMVPLCFPNPSRFVFNSSACGGIRTTKDWNISVDRNTPLYSTCNRDLKDKTRCRVCSEAAHTLTEKLTALYPNADAKRCFYYIALYAAAVVNPFGTTDISTTSCILCLEHYVVVHGSSHGVEELWKLIFALLGVVIGVVLAFVMIFVYRKWDKRKRQSVYHREIENKVRACVLPNAGAKWFRVEELERATERFSRQNVVGQGGDGVVYKGVLSDGAVVAVKEIYYLEGKGDEEFCYEVEIISKIKHRNLLALRGCCISSDDLEGKRRFLIYDFMPNGSLSDQMCSDGANRLTWPQRKNIILDVAKGLAYLHYEIKPPIYHRDIKPTNILLDSKMNAKLADFGLAKQGSEDESHLTTRVAGTYGYVAPEYALYGQLTEKSDVYSFGIVILEIMSGRKVLDVLDSSACLITDWVWTMTESGKMEEVFDLSIREGQEKIMERFVLVGMLCSHLAVASRPTIVEALKMLEGVIDIPKLPERPMPLGHESFQSSLLHGLQRSA 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02305 600 Pfam SPARK 24 176 IPR043891 -
Vimu1g02305 600 ProSiteProfiles Protein kinase domain profile. 295 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02305 600 Pfam Protein kinase domain 296 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02305 600 FunFam Receptor-like serine/threonine-protein kinase At4g25390 260 375 - -
Vimu1g02305 600 SUPERFAMILY Protein kinase-like (PK-like) 278 568 IPR011009 -
Vimu1g02305 600 SMART serkin_6 295 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02305 600 Gene3D Phosphorylase Kinase; domain 1 255 375 - -
Vimu1g02305 600 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 104 581 - -
Vimu1g02305 600 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
Vimu1g02305 600 Gene3D Transferase(Phosphotransferase) domain 1 376 575 - -
Vimu1g02305 600 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Vimu1g02305 600 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 376 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02305 Vimu-Chr1 33561658 33563460 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02305 23 597 Receptor kinase-like Gene Family AT1G11050 47.587 1.43e-179 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vimu1g02305 Pkinase 1.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02305 - - gmx:100800481 884.404