Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02292 ATGGCCGCACCGCAACTTCACTTTCCCCCAGGATTCAGATTCCACCCTACAGACGAAGAACTCGTCGTTCATTACCTCTGCCGCAAATGCCTCAACCAACAAATCGCCGTTCCCATAATCGCCGAAATCGACCTCTACAAATATGACCCTTGGTACCTCCCTGGAATGGCGTTGTACGGAGAGAAAGAGTGGTATTTCTTCTCGCCGAGGGACCGGAAGTACCCTAACGGTTCGCGGCCGAACCGGTCCGCGGGAACCGGGTACTGGAAAGCAACCGGAGCAGATAAACCGATTGGTAAACCGAAACCGGTTGGTATAAAAAAAGCCTTGGTGTTTTACGCTGGAAAAGCGCCCAAGGGAGAGAAGACAAACTGGATCATGCACGAGTATCGTCTCGCCGTGGTGGACCGTTCCGTTCGCAGAAAAAACAGCTTGAGGGTGGGTCTGGATGACTGGGTACTGTGTCGCATATACAACAAGAAAAGCGCGGTTGAGAAGCAACCGCCGGTCAAAATTGAGTGTTCCGAACTGGCGGACGAGAAGCCGGCGATTGCGCGGCAGTACGCGGAGGTAAAGGTGGCGGACTGCGTGAACTTCGAGGGGTCGGACTCGGTACCTTGGCTACTGACGATGGACTCGAGCTGCTCTGAGCAGGTGGTCTCGCCGGAGCCGGCGAGCGAGGTGCAGAGCGAGCCGAAGAGGAGCAACAACGAGTTTGAGTACAATTACGTGGATGCGAATCTGGCGTCGCAGTTCCACAGCGCGAATCAGATGTCGCCGCTGCAAGATATCTTCATGTACCTCTCAAAGCCATTTTTAAATGAGAATTAG 831 0.5403 MAAPQLHFPPGFRFHPTDEELVVHYLCRKCLNQQIAVPIIAEIDLYKYDPWYLPGMALYGEKEWYFFSPRDRKYPNGSRPNRSAGTGYWKATGADKPIGKPKPVGIKKALVFYAGKAPKGEKTNWIMHEYRLAVVDRSVRRKNSLRVGLDDWVLCRIYNKKSAVEKQPPVKIECSELADEKPAIARQYAEVKVADCVNFEGSDSVPWLLTMDSSCSEQVVSPEPASEVQSEPKRSNNEFEYNYVDANLASQFHSANQMSPLQDIFMYLSKPFLNEN 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02292 276 Gene3D NAC domain 17 165 IPR036093 GO:0003677|GO:0006355
Vimu1g02292 276 ProSiteProfiles NAC domain profile. 8 160 IPR003441 GO:0003677|GO:0006355
Vimu1g02292 276 Pfam No apical meristem (NAM) protein 9 132 IPR003441 GO:0003677|GO:0006355
Vimu1g02292 276 FunFam NAC transcription factor 17 164 - -
Vimu1g02292 276 PANTHER NAC TRANSCRIPTION FACTOR 56 8 213 - -
Vimu1g02292 276 SUPERFAMILY NAC domain 3 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02292 Vimu-Chr1 33404171 33405544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02292 6 272 NAC Transcription Factor Family AT1G01720 69.338 7.34e-136 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu1g02292 NAM 1.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02292 - - pvu:PHAVU_001G072200g 479.174