Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02291 ATGTCAAAGTCTCCCTCTCATGAACCGCGAAAGTCCATTTATTCTGGCTCTCTTCCTGGGGAATTTAATGAGGCAATGGCAATGGATGATCCAGAATCTACAATGGCAACAGTTGCTAATTTTGTGGAGCAACTGCATGCCAATTTGTCATCACCTGTTGAGAAAGAAACCGTTACAGCGCACTTACTAGGTATTGCCAAGAGAAGAAAGGATGCTAGAACACTCATAGGTTCTCATGCCCAAGCCATGCCATTGTTCATAAACATTCTCAGAAATGGAACACCTCTTGCAAAAGTTAATGTTGCTTCCACTCTGAGTGTCCTGTGCAAAGATGAAGAACTGAGGTTAAAAGTACTACTTGGTGGTTGTATCCCACCATTATTGTCACTTTTAAACTATGAATCCACTGAGACCAGGAAGGCAGCCGCTGAAGCAATATATGAAGTTTCCTCAGGTGGTCTGTCTGATGATCATGTTGGTATGAAAATTTTTGTCACAGAGGGTGTAGTTCCAACCTTATGGAGTCAACTAAATCCAAAGAACAAGGAAGACAAAATTGTGGAGGGTTTTATTACTGGAGCATTAAGAAATCTTTGTGGTGACAAAGATGGCTACTGGAAAGCAACATTAGAAGCTGGAGGTGTGGATATCATAGTGGGGCTCTTGTCTTCGGACAATTCTGTTTCTCAGTCAAATGCAGCTTCTCTATTGGCACGTTTAATGCTGGCTTTCAGTGATAGTATCCCCAAAGTAATAGACTCTGGAGCAGTCAAAGCTTTACTTCAGCTTGTTGGTCCAAAAAATGACATTTCTGTTAGGGCTAGTGCTGCTGATGCCCTAGAAGCTCTCTCTTCAAAATCTACTATGGCTAAAAAGGTCATCGTTAATGCAGATGGAATTCCAATCCTTATTGGAGCAATAGTTGCTCCTTCTAATGAGTGTATGCAAGGTGATGGTGGCCAGGCTCTACAAGAGCATGCAACTCGAGCTTTAGCCAATATCTGCGGTGGCATGTCTGCATTAATACTATATCTTGGAGAACTTTCACGTTCTACTCGCCTTGATGCTCCAGTTAGTGATATAATTGGGGCTCTTGCTTATACACTCATGGTCTTTGAGGAAAATGTAGGTGTTGATGAGAAACATTTTGATGCAACTCAGATAGAGGATATTCTAGTAACTCTTTTAAAGCCTCGGGACAGCAAATTGATTCAAGAGTGTGTTCTTGAGGCTATGGCCAGCCTTTATGGAAACATCTGTCTCTCAAAGTGGCTCATTCAAGCTGATTCAAAGAAGGTTCTTATTGGACTTATAACCATGGCGGCCACTGATGTGCAGGAGTATCTGATACTTTCGTTGACAACCTTGTGTAGTGATAAGATTGGAGTATGGGAGGCCATAAAAAAGAGAGAAGGTATCCAATTACTAATATCATTGCTTGGATTATCCAGTGAGCAGCATCAAGAGTACTCAGTTCAGCTGCTAGCGATCTTAACTGATCAGGTTGATGACAGCAAGTGGGCAATCACTGCTGCTGGAGGGATTCCTCCACTGGTGCAGTTGTTGGAGACAGGATCACAGAAAGCAAGAGAGGACGCAGCAAATGTTCTGTGGAGTTTGTGCTGTCACAGTGAAGATATTCGCGCTTGTGTTGAAAGTGCTGGAGCCATACCCGCATTTTTATGGCTTCTTAAGAGTGGTGGACCAAAAGGGCAGGAAGCTTCTGCTATGGCACTAACAAAGCTTGTTCGAGTAGCTGATTCTGCCACAATTAATCAGCTATTAGCATTGCTCCTGCGGGATTCTCCAAGCTCAAAAGCCCACATAATCCGAGTTTTAGGTCATGTTCTTACTATGGCTTCACAGAATGATCTTCTTGAAAAAGGTTCTGCAGCTAACAAGGGCTTGAGATCTCTAGTTCAGGTCCTCAATTCATCCAATGAGGAAACCCAAGAATATGCAGCTTCGGTTCTAGCTGATTTGTTTATCACAAGACAAGACATCTGTGATAGTCTTGCAACTGATGAGATTGTGCTTCCTTGCATGAAGCTTTTGACTAGTAAAACTCAAGTTGTTGCCACTCAATCAGCTCGAGCACTAAGTGCTCTGTCTCGTCCAACAAAGAACAAGGCTGCAAATAAAATGTCTTATATTGTAGAGGGTGATGTTGAGCCACTAATCAAGTTAGCTAAAACATCATCTGTTGATGCTGCTGAAACTGCTGTTGCTGCATTGGCCAATCTTCTCTTTGATCCTTTTATTGCTTCTGAGGCTCTGGCTGAAGATGTTGTTTCAGCTTTAACTAGAGTTCTGGCAGAAGGGTCCTTGGAAGGAAAACAAAATGCATCTCGAGCACTTCATCAATTATTGAAGCATTTTCCTGTAGGTGATGTTCTTAAGGGGAGTGCTCAATGTCGTTTCACTGTGCTTGCACTTGTTGATTTGTTAAAAGCTATGGATATGGACGGAACTGATGCTGCGGATGCTTTAGAAGTAATTGCATTGCTAGCCAGGACCAAGAAAGGTGTCAGCAACAATTACTCTGCATGGTCAGCTCTGGCTGAAATACCGTCAAGCTTAGAACTTCTTGTCTGCTGCCTGGCTGAGGGGCCCTCCCATGTGCAGGACAAGGGAATTAAAATTCTATCTAGACTTTGTGGGGATCAGCCTGCTGTTCTTGGTGATTTGTTATCAACTAGTTCCAGATCCATTGGTTCATTGGCTAATAGAATAATAAACTCCTCCAGTCTAGAAGTAAAACTTGGAGGGTCTGCCTTGCTAATTTGTGCTGCTAAGCAGAAGAAAGAGCTTTCAATGGATTCACTTGACGCTTCTGGGCATCTGAAACCATTAATATATTCTTTAATTGAAATGATAAAGCAAAGTTTTAAGTATTCTTCATTAGAAATTGAAGTTCTCGCTTCTAAAGGTTTTATGGAGAGAAATGGTTTTCAAGAAGTTGATGAGTTTGATGTTCCTGATCCTGCCACTGCCTTGGGAAGCACTATTGCGATGTGGTTGCTTTCAGTTATTGCTTCTTTCCATATAAAGAGCAAGTCCACAATTATGGAAGCTGGTGGACTTGAAGTTCTCTCGGACAAACTTGGAAGATATACATCAAATCCACAGGCAGAATATGAGGATACAGAAGGAATATGGATCAATGCCTTGCTGTTGGCCATTTTATTTCAGGATACGAATGTTGTTCAGTCTCCTGTGACAATGCACATTATACCTTCTATCACTCTTCTGCTAAGATCTGATGAAGTAATTGATAAATATTTTGCTGCCCAGGCAATGGCCAGTCTTGTTTGTAATGGCAATAAGGGAATAGATCTTGCCATTGCAAATTCTGGTGCTGTTGCTGGATTGATAACTATAATTGGGCATGTAGAGTCAGATATGCCTAATCTCATGGATTTATCAGAAGAATTTTCTTTGGTACAAAACCCTGATCAAGTTGTTTTGGATCACCTTTTTGAAATTGAAGATGTAAAAGTGGGTTCTACGGCCAGGAAATCTATACCACTCTTAGTGGATCTCCTGAGACCAATACCAGAAAGGCCTACTGCTCCACCAGTTGCTGTTAGACTCTTGATATCCATTGCAGATGGAAGTGATAGCAATAAATTAATCCTTGCTGAAGCTGGAGCTCTTGAAGCTTTGAACAAATACCTGTCCTTGAGTCCTCAAGACTCAACTGAGGCTGCTATATCTGAGTTATTGAGAATATTATTTTGCAATTCCGATCTCATTAAACACGAAGCAGCAATCAGTTCATTGAACCAACTTATAGCTGTTTTGCGTCTTGGATCAAGAACTGCTAGATACAGTGCAGCAAGAGCACTTCACGAACTTTTTGATGCTGACAACATTAGAGACTCAGAATTAGCTAAACAAGCTATTCAACCATTGGTTGATATGCTTAACACAACGTCAGGGCATGAACAGGAGGCTGCTCTCATGTCCTTGATCAAGTTAACTTCAGGAAATTCTTCAAAAGTATCTCTTCTTACTGATATGGAAGGAAACCCTCTTAAATGTCTATACAAAATACTGTCCTCTGCTTCATCCTTGGAACTGAAGAGCCATGCTGCCCAACTCTGCTTTGCCCTTTTTGCCAATAAGAAGATCAGAGCAGATCCAGTTGCCTCTGAATGCATAGAACCCCTTATATTACTGTTGCAGTCTGGTTCTGAGACAGCAATAGAGTCTGGGGTTTGTGCTTTTGAGAGATTGTTGGAAGATGAACAACAGGTAGAGCTTGCAGCGGCCTACAATATTGTGGATCTCCTTGTGAGCTTGGTTTCTGGTACTAACTATCAGCTTATTGAGGCTACCGTATCTGCTCTTATCAAATTGGGAAAAGATAGGACTACAAGTAAACTGGACATGGTGAAAGCTGGCATTATTGATAATTGTCTCAAGCTACTACAATTAGCACCTAGCTCTTTATGTTCCACAATATCTGAGCTCTTTCGCATTTTAACTAATAGTAGCGCAATTGCAAGAAGTTCAGATGCTGCAGAAATTGTAGAACCTCTTTTCCATGTTTTGCTCCGTCGAGATTTCAACTTATGGGGACAGCATAGTGCATTACAAGCACTTGTAAATATATTGGAGAAACCACAAAGTCTTGCCACCTTGAAGCTTACTCCAAGCCAAGTTATTGAACCCTTGATTTCTTTTCTGGAATCCCCAAACCAAGCTATTCAGCAACTTGGCACAGAATTGTTATCTCATCTTCTTGCACAGGAACATTTTCAGCAAGATATTACAACTAAGAATGCAGTTGTGCCCCTCGTACAGCTTGCAGGAATTGGAATATTAAACTTACAGCAAACAGCTATAAAAGCATTGGAAAAAATTTCCACTAGTTGGCCAAAGGCTGTTGCTGATGCAGGAGGTATTTTTGAGCTTGCAAAGGTTATTATTCAAGAAGACCCTCAGCCACCGCATGCACTGTGGGAATCAGCTGCTTTAGTTCTCTCTAATGTATTACATTCCAATGCCGATTACTACTTTAAAGTTCCTGTGGTAGTTCTTGTAAAACTTTTGCACTCAACACTTGAGAATACAATTAGCATAGCCCTTAATGGTTTAATAGTTCATGACAGAAGTGATGCTTCAAGTGCTGAGCAGATGATGGAAGCTGGAGTAATAGAGTCTCTGTTAGACCTGTTAAGATCTCATCATTGTGAAGAAGCATCTGGCAATTTATTAGAAGCTTTATTTAACAATGTGAGAGTACGAGAGATGAAGGTGTCTAAGTATGCTATAGCGCCTTTGTCCCAGTATCTCTTGGATCCACAAACCAGATCACAGTCTGGTAAGCTTCTTGCTGCTTTAGCTCTGGGAGATCTTTCCCAGCATGAAGGACATGCTAGATCTAGTGCATCTGTTTCTGCATGTCGGGCATTGATAAGTTTACTTGAAGATCAGCCAACTGAAGAAATGAAGGTGGTAGCTATATGTGCATTGCAAAACTTTGTCATGAACAGCAGGACAAATAGACGAGCTGTTGCAGAAGCTGGGGGCATACTGGTGATTCAAGAATTGCTGCTGTCTCCAAACACAGAAGTTGCTGCACAAGCTGCTTTACTGATCAAATTTTTGTTTTCTACACATACACTGCAAGAATATGTATCAAATGAGTTGATCAGGTCTTTGACAGCTGCACTGGAAAGAGAGTTATGGTCAACTGCCACAATCAATGAAGCGGTTCTGAAGACTTTGCATGTGATATTCATGAACTTCCCTAAGCTCCACACATCTGAAGCAGCAACTCTTTGCATTCCTCATTTGGTAGGTGCACTTAAATCTGGTGGTGAAGCGGCTCAGGACTCTGTACTTGACACGTTTTGCTTGCTAAGACAATCATGGTCAACTATGCCAATAGATATAGCAAAGTCCCAAGCTATGATTGCTGCCGAAGCCATCCCCATTTTGCAAATGCTCATGAAAACCTGCCCACCTAGTTTCCATGAGAGGGCAGATACTCTTCTGCACTGCTTACCAGGGTGTTTGACTGTCACAATTAAGCGTGGAAACAACCTCAGGCAAACTATGGGAAGCACTAACGCATTCTGCCGGTTAACAATAGGAAATGGTCCTCCAAAACAAACCAAGGTAGTGAATCATAGTACTTCTCCCGAATGGAAAGAAGGATTCACTTGGGCATTTGATGTACCTCCAAAGGGCCAAAAGCTACATATCATATGCAAAAGCAAGAATACTTTTGGGAAGACAACTCTTGGAAGAGTCACCATTCAAATTGATAAAGTTGTATCAGAGGGGGTTTATAGTGGATTATTCAGTCTTAATCATGATGGTAACAAAGATGGTTCTTCCCGAACACTTGAAATTGAGATTATATGGTCCAACAGGATCTCCAATGATGACACTTGA 6408 0.415 MSKSPSHEPRKSIYSGSLPGEFNEAMAMDDPESTMATVANFVEQLHANLSSPVEKETVTAHLLGIAKRRKDARTLIGSHAQAMPLFINILRNGTPLAKVNVASTLSVLCKDEELRLKVLLGGCIPPLLSLLNYESTETRKAAAEAIYEVSSGGLSDDHVGMKIFVTEGVVPTLWSQLNPKNKEDKIVEGFITGALRNLCGDKDGYWKATLEAGGVDIIVGLLSSDNSVSQSNAASLLARLMLAFSDSIPKVIDSGAVKALLQLVGPKNDISVRASAADALEALSSKSTMAKKVIVNADGIPILIGAIVAPSNECMQGDGGQALQEHATRALANICGGMSALILYLGELSRSTRLDAPVSDIIGALAYTLMVFEENVGVDEKHFDATQIEDILVTLLKPRDSKLIQECVLEAMASLYGNICLSKWLIQADSKKVLIGLITMAATDVQEYLILSLTTLCSDKIGVWEAIKKREGIQLLISLLGLSSEQHQEYSVQLLAILTDQVDDSKWAITAAGGIPPLVQLLETGSQKAREDAANVLWSLCCHSEDIRACVESAGAIPAFLWLLKSGGPKGQEASAMALTKLVRVADSATINQLLALLLRDSPSSKAHIIRVLGHVLTMASQNDLLEKGSAANKGLRSLVQVLNSSNEETQEYAASVLADLFITRQDICDSLATDEIVLPCMKLLTSKTQVVATQSARALSALSRPTKNKAANKMSYIVEGDVEPLIKLAKTSSVDAAETAVAALANLLFDPFIASEALAEDVVSALTRVLAEGSLEGKQNASRALHQLLKHFPVGDVLKGSAQCRFTVLALVDLLKAMDMDGTDAADALEVIALLARTKKGVSNNYSAWSALAEIPSSLELLVCCLAEGPSHVQDKGIKILSRLCGDQPAVLGDLLSTSSRSIGSLANRIINSSSLEVKLGGSALLICAAKQKKELSMDSLDASGHLKPLIYSLIEMIKQSFKYSSLEIEVLASKGFMERNGFQEVDEFDVPDPATALGSTIAMWLLSVIASFHIKSKSTIMEAGGLEVLSDKLGRYTSNPQAEYEDTEGIWINALLLAILFQDTNVVQSPVTMHIIPSITLLLRSDEVIDKYFAAQAMASLVCNGNKGIDLAIANSGAVAGLITIIGHVESDMPNLMDLSEEFSLVQNPDQVVLDHLFEIEDVKVGSTARKSIPLLVDLLRPIPERPTAPPVAVRLLISIADGSDSNKLILAEAGALEALNKYLSLSPQDSTEAAISELLRILFCNSDLIKHEAAISSLNQLIAVLRLGSRTARYSAARALHELFDADNIRDSELAKQAIQPLVDMLNTTSGHEQEAALMSLIKLTSGNSSKVSLLTDMEGNPLKCLYKILSSASSLELKSHAAQLCFALFANKKIRADPVASECIEPLILLLQSGSETAIESGVCAFERLLEDEQQVELAAAYNIVDLLVSLVSGTNYQLIEATVSALIKLGKDRTTSKLDMVKAGIIDNCLKLLQLAPSSLCSTISELFRILTNSSAIARSSDAAEIVEPLFHVLLRRDFNLWGQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPNQAIQQLGTELLSHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAIKALEKISTSWPKAVADAGGIFELAKVIIQEDPQPPHALWESAALVLSNVLHSNADYYFKVPVVVLVKLLHSTLENTISIALNGLIVHDRSDASSAEQMMEAGVIESLLDLLRSHHCEEASGNLLEALFNNVRVREMKVSKYAIAPLSQYLLDPQTRSQSGKLLAALALGDLSQHEGHARSSASVSACRALISLLEDQPTEEMKVVAICALQNFVMNSRTNRRAVAEAGGILVIQELLLSPNTEVAAQAALLIKFLFSTHTLQEYVSNELIRSLTAALERELWSTATINEAVLKTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGGEAAQDSVLDTFCLLRQSWSTMPIDIAKSQAMIAAEAIPILQMLMKTCPPSFHERADTLLHCLPGCLTVTIKRGNNLRQTMGSTNAFCRLTIGNGPPKQTKVVNHSTSPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKTTLGRVTIQIDKVVSEGVYSGLFSLNHDGNKDGSSRTLEIEIIWSNRISNDDT 2135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02291 2135 Gene3D - 1590 1793 IPR011989 -
Vimu1g02291 2135 Gene3D - 1794 2005 IPR011989 -
Vimu1g02291 2135 CDD C2 2009 2099 - -
Vimu1g02291 2135 Gene3D - 1346 1589 IPR011989 -
Vimu1g02291 2135 ProSiteProfiles C2 domain profile. 1988 2105 IPR000008 -
Vimu1g02291 2135 Gene3D - 158 353 IPR011989 -
Vimu1g02291 2135 Gene3D C2 domain 2007 2133 IPR035892 -
Vimu1g02291 2135 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 255 299 IPR000225 GO:0005515
Vimu1g02291 2135 SMART arm_5 201 242 IPR000225 GO:0005515
Vimu1g02291 2135 SMART arm_5 665 705 IPR000225 GO:0005515
Vimu1g02291 2135 SMART arm_5 244 285 IPR000225 GO:0005515
Vimu1g02291 2135 SMART arm_5 1834 1874 IPR000225 GO:0005515
Vimu1g02291 2135 SMART arm_5 1375 1415 IPR000225 GO:0005515
Vimu1g02291 2135 SMART arm_5 1543 1584 IPR000225 GO:0005515
Vimu1g02291 2135 SMART arm_5 111 151 IPR000225 GO:0005515
Vimu1g02291 2135 SMART arm_5 459 500 IPR000225 GO:0005515
Vimu1g02291 2135 SMART arm_5 1416 1456 IPR000225 GO:0005515
Vimu1g02291 2135 SMART arm_5 156 200 IPR000225 GO:0005515
Vimu1g02291 2135 SMART arm_5 287 336 IPR000225 GO:0005515
Vimu1g02291 2135 SMART arm_5 710 750 IPR000225 GO:0005515
Vimu1g02291 2135 SMART arm_5 544 584 IPR000225 GO:0005515
Vimu1g02291 2135 SMART arm_5 502 542 IPR000225 GO:0005515
Vimu1g02291 2135 SMART arm_5 1708 1749 IPR000225 GO:0005515
Vimu1g02291 2135 SMART arm_5 623 663 IPR000225 GO:0005515
Vimu1g02291 2135 SMART arm_5 1206 1246 IPR000225 GO:0005515
Vimu1g02291 2135 SMART arm_5 751 791 IPR000225 GO:0005515
Vimu1g02291 2135 SMART C2_3c 2008 2104 IPR000008 -
Vimu1g02291 2135 Gene3D - 32 157 IPR011989 -
Vimu1g02291 2135 Gene3D - 627 828 IPR011989 -
Vimu1g02291 2135 Gene3D - 368 626 IPR011989 -
Vimu1g02291 2135 SUPERFAMILY ARM repeat 1612 2005 IPR016024 -
Vimu1g02291 2135 SUPERFAMILY ARM repeat 71 311 IPR016024 -
Vimu1g02291 2135 Pfam Armadillo/beta-catenin-like repeat 506 541 IPR000225 GO:0005515
Vimu1g02291 2135 SUPERFAMILY ARM repeat 1188 1544 IPR016024 -
Vimu1g02291 2135 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 513 555 IPR000225 GO:0005515
Vimu1g02291 2135 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 21 2129 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Vimu1g02291 2135 Gene3D - 998 1150 IPR011989 -
Vimu1g02291 2135 Gene3D - 1164 1345 IPR011989 -
Vimu1g02291 2135 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2006 2112 IPR035892 -
Vimu1g02291 2135 SUPERFAMILY ARM repeat 433 1124 IPR016024 -
Vimu1g02291 2135 Pfam C2 domain 2008 2107 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02291 Vimu-Chr1 33347276 33358624 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02291 432 714 U-box Gene Family AT2G23140 26.962 4.52e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02291 - - gmx:100796864 3779.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02291 1 33347276 33358624 Vimu1g02291 1 33347276 33358624 ECH