Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02288 ATGGCTGAACTAGTGCTCTATTCTTCAACTTTTCTCTTTTTTATCTTCTTAACCTTTATAGTGAGAAAAATAGGAAACAAAAACAAGAAAGCTGAGGAAACACCTTATAACATGCCTCATGGACCTAGAAAGCTACCTATTATAGGAAATATGCACAATCTGTTATGTTCTCTGTCCCATAGAAAATTAAGAGACCTGGCCTTAAAATATGAACCCTTGATGCATCTTCAACTTGGAGAGGTTTCTACCATTGTCATTTCATCTCTTGAGTGTGCTAAGGAAGTGATGAAAACCCATGATATTAACTTTGCCACAAGGCCTAAAGTCCCATCTATTGATGTACTCAGTTACAACTACACAGGCATAGCTTTTGCTCCTTATGGAAATTATTGGAGGCAGGTAAGAAAAATTTCTATGTTGGAGCTTTTAAGCCTAAAACGTGTCAACTCCTACCAGCCAATCAGAGAAGAGGATTCATTCAATCTTGTTAAATGGATAGACTCGCAGAATGGATCCCCCGTTAACCTCACTGAAGCTGTACTTTCATCAATTTTTACAATTGTTTCAAGCTCTGCCTTTAGCAAGAAATGCAAAGACCATGAAAATTTTATATCAGTAATTAAAAAAATGATGAAAGTTGCAGCAGGTTTCGACATTAGAGATTTATTTCCTTTGCAACATGTAATGAGACACAAGCTCGAGAGCTTGCATCAACAAGCTGATCAAATAATCGAAAAGATCGTCAATGAACATCAAGAGGAAAAGTCTCAGGCAAAAGATTTCGAAGCAGCAGATGTCGTGGATGTTCTCATGCAGTATGAGGATGGTAGCCGGCAAGGTTTTTCTTTAACTAGGAACAACATCAAGGCAACAATTTTGGACATTTTTGGTGCTGGAGGTGAGACATCTGCAACAACCATAGATTGGACGATGACTGAAATGATGAAGAATTCAGGAGTAATGAAAAAAGCACAAGCTGAGGTTAGAAGGGTATTCAACAAGGAAGGAAGGGTTGATGAAAATTCCCTCGACGAACTCAAATATTTGAAACTTGTTGTGAAAGAGACCTTGAGATTACACCCTTCACTTCCTCTTTTGCTTCCAAGGAAATGCGATTACACCCTCCACTTCCTCTTTCTCTATGTACTGGTGTTAGGAATTTTTTGA 1167 0.3813 MAELVLYSSTFLFFIFLTFIVRKIGNKNKKAEETPYNMPHGPRKLPIIGNMHNLLCSLSHRKLRDLALKYEPLMHLQLGEVSTIVISSLECAKEVMKTHDINFATRPKVPSIDVLSYNYTGIAFAPYGNYWRQVRKISMLELLSLKRVNSYQPIREEDSFNLVKWIDSQNGSPVNLTEAVLSSIFTIVSSSAFSKKCKDHENFISVIKKMMKVAAGFDIRDLFPLQHVMRHKLESLHQQADQIIEKIVNEHQEEKSQAKDFEAADVVDVLMQYEDGSRQGFSLTRNNIKATILDIFGAGGETSATTIDWTMTEMMKNSGVMKKAQAEVRRVFNKEGRVDENSLDELKYLKLVVKETLRLHPSLPLLLPRKCDYTLHFLFLYVLVLGIF 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02288 388 Pfam Cytochrome P450 39 372 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g02288 388 PRINTS E-class P450 group I signature 350 368 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g02288 388 PRINTS E-class P450 group I signature 287 304 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g02288 388 PRINTS E-class P450 group I signature 183 201 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g02288 388 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g02288 388 PRINTS E-class P450 group I signature 307 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g02288 388 PRINTS E-class P450 group I signature 91 112 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g02288 388 PANTHER CYTOCHROME P450 71B11-RELATED 17 372 - -
Vimu1g02288 388 Gene3D Cytochrome P450 31 378 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g02288 388 PRINTS P450 superfamily signature 298 315 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g02288 388 PRINTS P450 superfamily signature 351 362 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g02288 388 Coils Coil 233 264 - -
Vimu1g02288 388 SUPERFAMILY Cytochrome P450 39 372 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02288 Vimu-Chr1 33298110 33299389 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02288 13 370 Cytochrome P450 AT1G13110 36.436 1.20e-74 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02288 - - gmx:100778572 538.88