Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02276 ATGAATCACCTACCTCGACTATTCGGCAATAGAAAGAAGCCTCCAAACATGGACCCCAAGAAGAGCAAGACGCTAGGCAAGAAGCAGCAGCCCAAGCTCGAGCGCCGCAACGCCGCCAAGCACTTCGAATACGACGCCGGATCCTCGTCTTCTTTGCGAGGTGACTCCGCATCCGTCTCCACGTCCTCTTCCTCGTCGTCTTCGTTATATACGCGCTCAATGGACTTCTACGGCCATCGGAGCTTCCGAATCGATGGCGTGGAGGGCGAGTTCGACCGGATTTGCCAAAGCCTCGGCCTCTCCGGCCCGGAGGACTTCTCCATTCCGACCGCCGCCTGGGAGGCCATGAAGCTCCGCTCCTCCTCCGACATCCCGTTGCTCCGGAACCACGACGGGAAGGCGTTCGACGAGGAGGCGAAGGAGAAGGAGGAAATTGAAGCGGTTGAGAGCGAGGATGAGGCTAGGGTTTTGGATGAGTGTGTTGTTCCTGCTGAGAGCAGTGGTTGCTGCACCGCTGGCGGCGGAGGAATTAAGGGTTTTCGGCCTCCGATGCTGAAGCCGCCGCCAGGGATTAGGGTTTCGGTGGTGGACGAAACGTGTTCGACATGGGATTTGTTGCGGGATTTTGCGCCGAAAGGGGAGGGAGGGAAGGAGACTTACGTGGAGTTGAGTGCTTCTGATGAAGATGAGGACGGAGAAGAAAAGGAAGAGGAGGATGAGGAAGAAGGGGAAGTTGGTGGAGTTAGGGTGGAGAGAGAAGAGGAGGAAAACGCGGCGAGGATTGCGGATATTGTGGATGAGTTTTCTGGGTTTTCTACTTCGAACGAAGATGACTCTTCTAGCACTACCACGGGTCCTAATTCTAGTAATATATCTCCTAATGGGAGAATCAAGCGTGTGATTACCGCGGGTAACTGGCAGAAGGGTGAGCTTTTGGGGCGTGGCTCGTTTGGCTATGTCTATGAAGGGATTTCTGAGATACTATTGTTAGTTTTAGAATTAGGAGATTGGCAGGAAATTGCACTTTTGAGTCAATTTGAACACGAGAATATAGTTCAATACTTTGGCACTGAAATGAGATATACTCTTCGAGATTCTCAAGTATCTGCTTATACAAGGCAGATTTTGCATGGTTTAAAGTATCTCCATGATCGAAACATCGTTCACAGGGATATTAAATGTGCAAATATATTGGTGGATGCGAGTGGATCTGTTAAGCTTTCAGATTTTGGATTGGCGAAGGCAATCAAATTGAATGATGTTAAATCATGCAAGGGAACAGCATTCTGGATGGCCCCAGAGGTTGTGAAAGGTAAACAAAAAGGTTACGGGCTTCCAGCTGATATATGGAGTCTTGGATGTACTGTGTTAGAGATGTTAACTGGCCAATTTCCATACTCTCACTTAGAATGTGTATGTATTACTACTTCCGTTTTGATGAATCTCTCTGGACAACAGATGCAGGCATTGTTTAGAATTGGAAGAGGCGAGCCCCCTATTGTGCCAGATTCCCTTTCAAGAGATGCCCAGGATTTTATCCTGCAGTGTCTCAAAGTTAATCCAGATGAACGTCCCAGTGCTGCTAAACTCCTAAACCATACCTTTGTCCAAAGGCCGCTACTTTCCCAGACCTCTGGTTCTGCATCTCCTTATATTCGAAGGGGTTAA 1668 0.491 MNHLPRLFGNRKKPPNMDPKKSKTLGKKQQPKLERRNAAKHFEYDAGSSSSLRGDSASVSTSSSSSSSLYTRSMDFYGHRSFRIDGVEGEFDRICQSLGLSGPEDFSIPTAAWEAMKLRSSSDIPLLRNHDGKAFDEEAKEKEEIEAVESEDEARVLDECVVPAESSGCCTAGGGGIKGFRPPMLKPPPGIRVSVVDETCSTWDLLRDFAPKGEGGKETYVELSASDEDEDGEEKEEEDEEEGEVGGVRVEREEEENAARIADIVDEFSGFSTSNEDDSSSTTTGPNSSNISPNGRIKRVITAGNWQKGELLGRGSFGYVYEGISEILLLVLELGDWQEIALLSQFEHENIVQYFGTEMRYTLRDSQVSAYTRQILHGLKYLHDRNIVHRDIKCANILVDASGSVKLSDFGLAKAIKLNDVKSCKGTAFWMAPEVVKGKQKGYGLPADIWSLGCTVLEMLTGQFPYSHLECVCITTSVLMNLSGQQMQALFRIGRGEPPIVPDSLSRDAQDFILQCLKVNPDERPSAAKLLNHTFVQRPLLSQTSGSASPYIRRG 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02276 555 Gene3D Transferase(Phosphotransferase) domain 1 359 550 - -
Vimu1g02276 555 MobiDBLite consensus disorder prediction 224 244 - -
Vimu1g02276 555 Pfam Protein kinase domain 362 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02276 555 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 31 550 - -
Vimu1g02276 555 MobiDBLite consensus disorder prediction 49 69 - -
Vimu1g02276 555 SUPERFAMILY Protein kinase-like (PK-like) 289 542 IPR011009 -
Vimu1g02276 555 Gene3D Phosphorylase Kinase; domain 1 294 358 - -
Vimu1g02276 555 MobiDBLite consensus disorder prediction 1 69 - -
Vimu1g02276 555 MobiDBLite consensus disorder prediction 269 295 - -
Vimu1g02276 555 MobiDBLite consensus disorder prediction 13 42 - -
Vimu1g02276 555 ProSiteProfiles Protein kinase domain profile. 306 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02276 555 ProSitePatterns Serine/Threonine protein kinases active-site signature. 387 399 IPR008271 GO:0004672|GO:0006468
Vimu1g02276 555 SMART serkin_6 306 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02276 555 MobiDBLite consensus disorder prediction 223 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02276 Vimu-Chr1 33015773 33024658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02276 32 540 MAP Kinase Kinase Kinase AT4G08500 45.950 1.28e-130 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vimu1g02276 Pkinase 9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02276 K13414 - gmx:100804388 717.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02276 1 33015773 33024658 Vimu1g02276 1 33015773 33024658 ECH
Vimu1g02276 1 33015773 33024658 Vimu10g02220 10 32561838 32569981 PCT