Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02274 ATGGCGGCTTTCGTTGACAACCGTCAATTCGGCACTCACATGAACGGCGTCGTTCGCAGTTGCGGCCAGGATCTGAAGCCCTCTCTGCCGTTGGATTTCGATCTGGACTCCTCCAGCAGCGACGAGGATGAAAACGACGACGCCTCGTACCTGAAAGAGCTCATACGAAAAGCGAACGCGGAAACGGAGGCGTCGGTTATGGACCCGCGCGACGAGGGAACGGCGGATCAGTGGGTCGCAAGGAACTCTTCCATGGTCCGCCTCACAGGGAAGCACCCCTTCAACGCCGAATCCCCTTTGCCGCGTCTTATGCACCACGGCTTCATCACCCCGGTCCCGCTCCACTACGTCCGCAACCACGGTCCAGTTCCCAAGGCCAAGTGGGAAGACTGGACCGTTGAAATAACCGGTCTAGTCAAACGTCCAACCCGGTTCACCATGGACCGCCTCGTCCTCGAGTTCCCCCACCGAGAGTTCCCCGCCACGCTCGTCTGCGCCGGGAACCGTCGCAAGGAACAGAACATGGTCAAGAAAACCATCGGCTTCAACTGGGGCTCCGCCGGCACCTCCACCTCCGTGTGGCGCGGCGTGCCGCTGCGTCAAGTGCTACGACGCTGCGGGATCCTTACACGTGCGAAGGGCGCGCTTCATGTGTGCTTCGAGGGCGCCGAGAATCTCCCCGGCGGCGGCGGATCGAAGTACGGAACGAGCATCTCGAGGGAGATGGCCATGGACCCCTCGCGCGACATCATCCTTGCGTACATGCAAAACGGCGAACCTCTGGCACCGGATCACGGCTTCCCCGTTCGCATGATTATTCCGGGGTTTATCGGTGGCAGAATGGTGAAGTGGCTCAAACGCATTGTTGTTACTGAACTTGAGTGCGACAATCATTATCATTACAAGGATAACAGAGTGCTCCCTTCCCATGTTAGTCCAGAACTTGCCAATGAAGAAGGTTGGTGGTACAGACCAGAGTACATAATCAACGAGTTGAATATAAACTCAGTGATAACGACTCCGTGTCACGATGAGATTTTGCCCATCAACTCATGGACAACGCAGAGGCCTTACGTAGTCAGAGGCTACGCTTATTCTGGTGGTGGGAGGAAAGTGACACGTGTGGAGGTAACACTTGACGGTGGAGAAACGTGGCACGTGTGCACACTGGACCATCCTGAGAAACCTAATAAATATGGGAAGTATTGGTGCTGGTGCTTCTGGTCTTTGGAGGTGGAGGTGTTGGACCTGCTGGGGACCAAAGAGATTGCAGTTCGAGCTTGGGATGAAGGTCTCAACACGCAGCCAGAAAACCTAATTTGGAATCTTATGATGATGAACAACTGTTGGTTCAGAGTGAAGACAAATGTTTGCAAGCCCCACAAGGGTGAGATTGGAATGGTGTTTGAACACCCAACCCAACCAGGGAACCAACCTGGTGGATGGATGGCCAAGGAGAAGCACTTGGAGACATCACAAGACCCCAAACCAAGCCTCAAAAAGAGTGTCTCTACGCCATTCATGAACACCAATTCAAAAATGTTTTCAATCTCCGAAGTTAAAAAACATAGCAACCCTGATTCCACTTGGATCATCGTCCACGGTCACGTCTACGATTGCACTCGCTTCCTCAAAGATCACCCTGGTGGCACCGACAGCATCCTCATCAATGCCGGCACTGACTGCACCGAAGAGTTTGACGCCATCCACTCTGACAAAGCAAAGAAGATGCTCGAAGATTATCGAATTGGCCAGCTCATCACTACAGGTAATATACATAAAATCTGGTAA 1791 0.5343 MAAFVDNRQFGTHMNGVVRSCGQDLKPSLPLDFDLDSSSSDEDENDDASYLKELIRKANAETEASVMDPRDEGTADQWVARNSSMVRLTGKHPFNAESPLPRLMHHGFITPVPLHYVRNHGPVPKAKWEDWTVEITGLVKRPTRFTMDRLVLEFPHREFPATLVCAGNRRKEQNMVKKTIGFNWGSAGTSTSVWRGVPLRQVLRRCGILTRAKGALHVCFEGAENLPGGGGSKYGTSISREMAMDPSRDIILAYMQNGEPLAPDHGFPVRMIIPGFIGGRMVKWLKRIVVTELECDNHYHYKDNRVLPSHVSPELANEEGWWYRPEYIINELNINSVITTPCHDEILPINSWTTQRPYVVRGYAYSGGGRKVTRVEVTLDGGETWHVCTLDHPEKPNKYGKYWCWCFWSLEVEVLDLLGTKEIAVRAWDEGLNTQPENLIWNLMMMNNCWFRVKTNVCKPHKGEIGMVFEHPTQPGNQPGGWMAKEKHLETSQDPKPSLKKSVSTPFMNTNSKMFSISEVKKHSNPDSTWIIVHGHVYDCTRFLKDHPGGTDSILINAGTDCTEEFDAIHSDKAKKMLEDYRIGQLITTGNIHKIW 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02274 596 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 137 172 IPR022407 GO:0043546
Vimu1g02274 596 Pfam Mo-co oxidoreductase dimerisation domain 327 457 IPR005066 GO:0016491|GO:0030151
Vimu1g02274 596 Pfam Oxidoreductase molybdopterin binding domain 120 299 IPR000572 -
Vimu1g02274 596 Gene3D - 70 320 IPR036374 -
Vimu1g02274 596 PRINTS Eukaryotic molybdopterin domain signature 86 100 IPR008335 GO:0016491
Vimu1g02274 596 PRINTS Eukaryotic molybdopterin domain signature 161 172 IPR008335 GO:0016491
Vimu1g02274 596 PRINTS Eukaryotic molybdopterin domain signature 278 291 IPR008335 GO:0016491
Vimu1g02274 596 PRINTS Eukaryotic molybdopterin domain signature 262 275 IPR008335 GO:0016491
Vimu1g02274 596 PRINTS Eukaryotic molybdopterin domain signature 329 341 IPR008335 GO:0016491
Vimu1g02274 596 PRINTS Eukaryotic molybdopterin domain signature 439 452 IPR008335 GO:0016491
Vimu1g02274 596 PRINTS Eukaryotic molybdopterin domain signature 426 438 IPR008335 GO:0016491
Vimu1g02274 596 PRINTS Eukaryotic molybdopterin domain signature 108 124 IPR008335 GO:0016491
Vimu1g02274 596 PRINTS Eukaryotic molybdopterin domain signature 245 261 IPR008335 GO:0016491
Vimu1g02274 596 PRINTS Eukaryotic molybdopterin domain signature 172 184 IPR008335 GO:0016491
Vimu1g02274 596 PRINTS Eukaryotic molybdopterin domain signature 360 374 IPR008335 GO:0016491
Vimu1g02274 596 PRINTS Eukaryotic molybdopterin domain signature 187 202 IPR008335 GO:0016491
Vimu1g02274 596 PRINTS Eukaryotic molybdopterin domain signature 401 411 IPR008335 GO:0016491
Vimu1g02274 596 PRINTS Eukaryotic molybdopterin domain signature 374 386 IPR008335 GO:0016491
Vimu1g02274 596 PANTHER SULFITE REDUCTASE 56 460 - -
Vimu1g02274 596 Gene3D - 508 589 IPR036400 -
Vimu1g02274 596 FunFam Nitrate reductase 508 589 - -
Vimu1g02274 596 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 512 587 IPR001199 -
Vimu1g02274 596 Pfam Cytochrome b5-like Heme/Steroid binding domain 518 586 IPR001199 -
Vimu1g02274 596 PRINTS Cytochrome B5 signature 562 569 IPR001199 -
Vimu1g02274 596 PRINTS Cytochrome B5 signature 537 547 IPR001199 -
Vimu1g02274 596 PRINTS Cytochrome B5 signature 547 561 IPR001199 -
Vimu1g02274 596 PRINTS Cytochrome B5 signature 574 586 IPR001199 -
Vimu1g02274 596 CDD eukary_NR_Moco 71 455 - -
Vimu1g02274 596 FunFam Nitrate reductase 72 321 - -
Vimu1g02274 596 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 511 588 IPR036400 -
Vimu1g02274 596 FunFam Nitrate reductase 331 506 - -
Vimu1g02274 596 Gene3D - 331 504 - -
Vimu1g02274 596 SUPERFAMILY E set domains 331 457 IPR014756 -
Vimu1g02274 596 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 68 329 IPR036374 -
Vimu1g02274 596 SMART Cyt_b5_2 515 587 IPR001199 -
Vimu1g02274 596 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 543 550 IPR018506 GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02274 Vimu-Chr1 32907518 32913726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02274 508 588 NADPH P450 reductases AT5G48810 45.122 1.19e-20 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02274 K10534 - gmx:100813471 1108.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02274 1 32907518 32913726 Vimu1g02274 1 32907518 32913726 ECH