Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02254 ATGAAGAGGGATACAAATATCATAGCAAAACCCTCTTATTTTTCACTCTCACACGCCCTAATCTGCACAGAAACTGTGGGGAACCCCAAATCCCAGAAACTCTGGGAACCCCAAGCGAACTATGCATTTTCAGTCATAACCTCAAAACTGTGTACCAAGGACTGCATCTTTTCTCCTTATTTCCCTTCCAATGACCCTCAAAAGTTTGCCTTAGTTCACAAGGTTTTTGGAGAGGAGAGGGAGAAGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGTGAGAGTGAGAGGGAAAGGGGAGGAAGAAGGAGACGGTGGCCTCTAATTGTTATCAGCTTGGACCTTCCATCGGCAATTATTGCAGATGCAACTCGTCTTCTAGAAGCAAGCAATCAAAGCATCGGTTGTAGGCGCATCTTGAAGACCTTACACCGAACCTTTGAATCTGCGAATGACGCTTCGGGGCGCAGTCCTAATTCTAGAGGTGCACGAAACTCGAACTCCACCTATTCTTATGGCATCCGTTTGGCTAGAATCGATTTCCCACGCTTTGGTGGAGGTAACCTTCCAAATTGGACTGAATTTACAAGTATATCGATCGATCATTTTGGTGAAATCGATGATGATCTGATGTCGGACCTTATAAAATTACGGCAAACCGGTATTGTGGTGGAATATCATGATCAATTTGATGTTATAACTTCTCGGTTGGATCTCAGTGATATCTATTTGTTAAGCATTTCCTTAGGGGGTTTGAAAAAGGATATTCAAATGATAATCAAAATGTTTCAGCCCCAGGATTTAAGGAAGGCATTCCATTTGGCTAAATTGCATGAGTCCGCTTCTGCTTCAAACATTCCTACCAAATTTTCTCTTAAATCCCTGAGTACATATACAAATACAAAGGCCATTTTGCCTACACCTAAACCTCTGAACAAGACAACTGGCTCACAGCTTACGCTACACACAAACCAACGACACTCTAATAAGAAACTCACTCCTGCTTTTATGACTGAGAGGCGATCAAAGGGCCTTTGCTATTTTTCTGATGAACCATACAACCCTACACATCCTGAAATTATCAGACTTTTAAAGCACATACTACTTTGTGATTAA 1119 0.4263 MKRDTNIIAKPSYFSLSHALICTETVGNPKSQKLWEPQANYAFSVITSKLCTKDCIFSPYFPSNDPQKFALVHKVFGEEREKERERERERERESESERERGGRRRRWPLIVISLDLPSAIIADATRLLEASNQSIGCRRILKTLHRTFESANDASGRSPNSRGARNSNSTYSYGIRLARIDFPRFGGGNLPNWTEFTSISIDHFGEIDDDLMSDLIKLRQTGIVVEYHDQFDVITSRLDLSDIYLLSISLGGLKKDIQMIIKMFQPQDLRKAFHLAKLHESASASNIPTKFSLKSLSTYTNTKAILPTPKPLNKTTGSQLTLHTNQRHSNKKLTPAFMTERRSKGLCYFSDEPYNPTHPEIIRLLKHILLCD 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02254 372 Coils Coil 79 99 - -
Vimu1g02254 372 Pfam Lateral organ boundaries (LOB) domain 49 79 IPR004883 -
Vimu1g02254 372 MobiDBLite consensus disorder prediction 80 100 - -
Vimu1g02254 372 ProSiteProfiles LOB domain profile. 39 145 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02254 Vimu-Chr1 32570966 32575027 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02254 51 77 AS2 family AT3G26620 74.074 1.40e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu1g02254 LOB 3.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02254 - - var:108341562 306.99