Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02253 ATGCTGAAGAAAGGTGTTGAGGTTGTAAAGAGAGAAGGTCTTGAGGTTACTGATGATGTGTCAATTGTTGAGCACCTCAAGCATCCTGTTTATATCACGGAAGGATCTAATACCAAGATTAAGGTTACTACACATCTTGTTTTGCTTAGTGGCTTAAATCTAGGGACAGGACTTTCCAAAAGGGATGCCAGAGTAGAGGGAGAGATGTGTTTCCTTACCCCAAAAGTTGGTACTCTAAGTTACATGTCACCAGAAGCATTTATGTGCAATGAGAGTGATGCGAGTGGAAGCATCATGAAGTGTGGTCGGCCATCAGATATCTGGTCCCTTGGCTGCATTCTTTATCAAATGGTATATGGGAGAACACCCTTTTCAGATTACAAGACATTTTGGGCCAAATTCAAAGTTATAACTGATCCCAATCACGAAATTATGTACGAACCGGTTTCAAATCCTTGGCTTCTTGATCTTATGAAAAAGTGTCTAGCATGGGATCGCAATGAAAGGTGGAGAATTCCTCAGTTGCTCCAGCATCCTTTTCTAGTTCCCCCAGTTCCATGTCATCAATCTTTGTTCCAAGATCAAACCTTTAAATTGCTGCAACATATAGCTGAAACTTGCAAAAATGACCCAGAAGCATCGCAGCTCTGTTTTCAACTTCAACAGCTGCTTGATAATCCCATAAAATTAACTAGTACTCATTCATTAAACTCCCTAGACCAACAGCATAAATTGCTGTCCCGAATATCCGAAGTTTGTATTAAACTACGGGAACGCTTTCCAAATTCGGACGAAGAATAG 801 0.407 MLKKGVEVVKREGLEVTDDVSIVEHLKHPVYITEGSNTKIKVTTHLVLLSGLNLGTGLSKRDARVEGEMCFLTPKVGTLSYMSPEAFMCNESDASGSIMKCGRPSDIWSLGCILYQMVYGRTPFSDYKTFWAKFKVITDPNHEIMYEPVSNPWLLDLMKKCLAWDRNERWRIPQLLQHPFLVPPVPCHQSLFQDQTFKLLQHIAETCKNDPEASQLCFQLQQLLDNPIKLTSTHSLNSLDQQHKLLSRISEVCIKLRERFPNSDEE 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02253 266 Pfam Protein kinase domain 72 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02253 266 ProSiteProfiles Protein kinase domain profile. 1 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02253 266 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 43 IPR029044 -
Vimu1g02253 266 SMART serkin_6 1 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02253 266 SUPERFAMILY Protein kinase-like (PK-like) 57 206 IPR011009 -
Vimu1g02253 266 Gene3D Transferase(Phosphotransferase) domain 1 44 184 - -
Vimu1g02253 266 PANTHER MIXED LINEAGE PROTEIN KINASE 75 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02253 Vimu-Chr1 32537158 32540603 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02253 71 181 MAP Kinase Kinase Kinase AT2G32510 37.190 1.41e-12 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Vimu1g02253 Pkinase 8.7e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02253 K08866 - vum:124836719 449.899