Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02252 ATGTCTTCAAGGATACACGAGGAGTCCTCACTGCCTAGTGAATCGGCTTGGTCGCTGACGGGGGGATTTCTCTCATCGTCGACACCCAACATAGAAGAAGAGGATAATGCAATGTCGTCGTCAGCATACCCCTGGCCTTCCCTCCTAGCGGACTCAGAAGCACTTAGAGAAGACATGATTTACCTGGAAGAAGGATTGGAGCTTTTGAAAGGAGAAGGTAGAACGAACGTTCAGGGATCAGAGAGTTTAAGGCACTGGAATGGAAAAACATCGCCACCCGCACGACGAAAGCCTCATGCGGGGTTAGAAATACGGCATTCCATGGAAGAGAACCCTAATTTCTCTCTCACTCACGATTCTTCCCTTTCCTCTCCGGAATTCTTCAAACAAGTCCAAGCTGCTCTCAAGCGCCATCGCCCTCTCGCCGTTAATGCCTCTTCAGCTTCAACCCAATCGCATGCCCTGAGGCCAAAGCGCTCCATGGTGGCGCACCGAAACGTCGCCAACAGGTCCGAAGGGGAACCTCCCTCCATTTCGGACTCGTTCACCGGTGAAGGTTGTAAGAACGAACCCTCTCTGCCCGTGGAATCTCATAGTGTTGGTGCGCACAAGAAGGTTCGTTTTTCAACTGAGAGCAACAATGCCACTTCACAGCCGCAGGGGGTCAATGTAGCAAAAGCTACTGAAATGGAGTACATATCATCTCATATGGGTTTACTTGCTTTGACAGATGGGGCATCAATTGGATTCAACCAACATGTGAAACACCACAATATGCAGCAGGCAGAGTCTGAGACTAGTTTGTTATCTGAGGGAGGCAAGAGTTCTCTGCTTCCAAGGAGAAGAATAGTTACTGAGGATCATCTCCAGCAATTTAAAAACTTTTTGAGTCAACCAGTTACACTATCTTCCCTAGTGGGATTGCCATGCCCTACAACTACATCAGTCCATTCAACTTCAGCTCCAATGCCGAATTCTATAACTCATTGTGCCAATTCCTATATGGATAGTGACTCGCATGTGACTGCAGAACCTTGTGATAACCTGAATCTCAATCCTCATCCTATAAAACAAGGGGCTGTTAAATCACCATATAATTCTCGGAAAGACACCAATAGAATGTCAGTTGATCAGGTGGCAAGTGCAGTTCAAGAATATAATTCACTAAATGAGGCAGAGATGACATTTAAGCACAGTGACCCATCTAAGGAGCAACAAGGATGTTTGCTAAAGGAAACTAGTAAATATACTTCTTGTTGTAATGACATGTTAAGTAACGCGGACGAGCCTGCAGCTGTTACCAACATACTGCCTCAGGGTCTGACTTTATCTTCAGATAAGAAGCTGGAATCTTCTAGGTTAGAAAAGCAAGAAAAAAAGGCAAGTTGTAAAGGACCTCCAGTCGCTCGAAAGAGGACCTATGACCCTGAGTTGTTTTTTAAAGTCAATGGCAAGCTTTATCAAAGGCTTGGCAAGATAGGAAGTGGTGGAAGCAGTGAGGTGCACAAAGTGATTTCATCAGACTGTACTATCTATGCACTTAAAAGAATAAAACTAAAGGGTCGTGATTATGCCACAGCATACAGCTTTTGTCAGGAGATCGAGTATCTAAATAGGCTGAAAGGAAAGAATAATATTATCCAGCTTATAGATTATGAGGTGACTGACAAGGCTTTGTTTGAGGGAGTCTTGAATGGCTCCTCCAGTAGTAAAGATGGTAGAGTCAAGGATGATGGATACATATACATGGTGCTTGAATATGGGGAAATTGATTTGGCTCATATGTTGTCTCAAAAGTGGAAGGAACTAGATGGGAACAACCAGACTATAGATGCGAATTGGCTTCGGTTTTATTGGCAGGATGTTATGTTTGAGTATCCAGAACAAATTCTTCAGGCTGTCAACACAATTCATGAAGAACGTATTGTGCATTCTGACTTGAAGCCAGCTAACTTCCTCCTTGTCAAAGGCTCATTAAAACTGATCGATTTTGGAATAGCCAAAGCAATAATGAACTCAACCTCTGCAAACGTGGTGTCTGGTGGTAATGTTGAGAGAAAGAAGAGAGTTAGTTATCTTGTTGACCAGAGGGCAGGGCAAAAGGGTGGAAGCGATCATATCAAAGGAGTATCTTCCTCTTTTCGGTCAACCCATTGCTTTGTTCAGCTTCCACATTTTATTCAAACATGGTTCAAGGGAAAGAAGTCACTGGTTGTTGATCTGAGCTTTGAGCTTGTTTGCATTCATGATTCTGCAAGACCGTTGGTGTTATCAAGAGATGTGAGAAATGTCCTTACAGATGGATTATTGAATGGAGCTGCGGTTCTTGGTGTCCCTATGAATGCTACAATCAAGGAGGCAAACAAAGAATGA 2373 0.4391 MSSRIHEESSLPSESAWSLTGGFLSSSTPNIEEEDNAMSSSAYPWPSLLADSEALREDMIYLEEGLELLKGEGRTNVQGSESLRHWNGKTSPPARRKPHAGLEIRHSMEENPNFSLTHDSSLSSPEFFKQVQAALKRHRPLAVNASSASTQSHALRPKRSMVAHRNVANRSEGEPPSISDSFTGEGCKNEPSLPVESHSVGAHKKVRFSTESNNATSQPQGVNVAKATEMEYISSHMGLLALTDGASIGFNQHVKHHNMQQAESETSLLSEGGKSSLLPRRRIVTEDHLQQFKNFLSQPVTLSSLVGLPCPTTTSVHSTSAPMPNSITHCANSYMDSDSHVTAEPCDNLNLNPHPIKQGAVKSPYNSRKDTNRMSVDQVASAVQEYNSLNEAEMTFKHSDPSKEQQGCLLKETSKYTSCCNDMLSNADEPAAVTNILPQGLTLSSDKKLESSRLEKQEKKASCKGPPVARKRTYDPELFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCTIYALKRIKLKGRDYATAYSFCQEIEYLNRLKGKNNIIQLIDYEVTDKALFEGVLNGSSSSKDGRVKDDGYIYMVLEYGEIDLAHMLSQKWKELDGNNQTIDANWLRFYWQDVMFEYPEQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMNSTSANVVSGGNVERKKRVSYLVDQRAGQKGGSDHIKGVSSSFRSTHCFVQLPHFIQTWFKGKKSLVVDLSFELVCIHDSARPLVLSRDVRNVLTDGLLNGAAVLGVPMNATIKEANKE 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02252 790 ProSiteProfiles Protein kinase domain profile. 487 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02252 790 ProSitePatterns Protein kinases ATP-binding region signature. 493 515 IPR017441 GO:0005524
Vimu1g02252 790 MobiDBLite consensus disorder prediction 448 467 - -
Vimu1g02252 790 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 701 790 IPR029044 -
Vimu1g02252 790 Gene3D Phosphorylase Kinase; domain 1 480 565 - -
Vimu1g02252 790 MobiDBLite consensus disorder prediction 1 43 - -
Vimu1g02252 790 Pfam Protein kinase domain 487 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02252 790 ProSitePatterns 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 746 753 IPR018294 GO:0003824|GO:0008299
Vimu1g02252 790 SMART serkin_6 487 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02252 790 FunFam serine/threonine-protein kinase mph1 isoform X2 480 567 - -
Vimu1g02252 790 ProSitePatterns Serine/Threonine protein kinases active-site signature. 642 654 IPR008271 GO:0004672|GO:0006468
Vimu1g02252 790 Gene3D Transferase(Phosphotransferase) domain 1 573 691 - -
Vimu1g02252 790 MobiDBLite consensus disorder prediction 172 186 - -
Vimu1g02252 790 MobiDBLite consensus disorder prediction 168 199 - -
Vimu1g02252 790 MobiDBLite consensus disorder prediction 79 98 - -
Vimu1g02252 790 PANTHER MIXED LINEAGE PROTEIN KINASE 120 678 - -
Vimu1g02252 790 SUPERFAMILY Protein kinase-like (PK-like) 481 679 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02252 Vimu-Chr1 32526800 32537088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02252 466 680 Core Cell Cycle Gene Families AT5G10270 26.009 2.21e-10 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Vimu1g02252 Pkinase 2.8e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02252 K08866 - gmx:100816674 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02252 1 32526800 32537088 Vimu1g02252 1 32526800 32537088 ECH