Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02248 ATGTGCTGGATGCATCCAAGAAGCATAAGAAACATGCTGAAAAGGTTGACGCCGCTAGCGCTGAGCGGTGGAGGGGTGTATGCCTATAAGATTAACATTATTGACACACCTGGTCATGTTGATTTTACCATTGAGGTTGAGAGGGCTTTGCGTGTCCTTGATGGTGCCATTCTCGTTCTTTGTAGTGTTGGTGGGGTGCAAAGTCAGTCCATTAGTGTTGATCGGCAAATGAGAAGATACGATATTCCAAGACTTGCATTTATCAATAAACTTGATCGGATGGGAGCAAATCCATGGAAAGTGTTAAATCAGGCTAGATCTAAGCTTCGACATCATAGTGTTGCAATGCAAGTTCCAATAGGTTTGGAAGAAGATTTTAAGGGACTTGTTGATCTTGTGCAGTTAAAGGCCTACTATTTTCATGGTTCAAGTGGTGAAAAAGTTGTCTTTGAAGATGTGCCTGCAGATATGGAAGCATTAGTGGCAGAAAAAAGACGTGAACTTATAGAAACTGTTTCAGAAGTTGATGATAAACTTGCTGAAGCTTTTCTTGGCGATAAGACCATATCAGCTGCTGATCTTGAGTGTATATATTTATGTGTACATCCACTATTGTAG 618 0.4078 MCWMHPRSIRNMLKRLTPLALSGGGVYAYKINIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSISVDRQMRRYDIPRLAFINKLDRMGANPWKVLNQARSKLRHHSVAMQVPIGLEEDFKGLVDLVQLKAYYFHGSSGEKVVFEDVPADMEALVAEKRRELIETVSEVDDKLAEAFLGDKTISAADLECIYLCVHPLL 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02248 205 PRINTS GTP-binding elongation factor signature 48 59 IPR000795 GO:0003924|GO:0005525
Vimu1g02248 205 PRINTS GTP-binding elongation factor signature 32 42 IPR000795 GO:0003924|GO:0005525
Vimu1g02248 205 PRINTS GTP-binding elongation factor signature 84 93 IPR000795 GO:0003924|GO:0005525
Vimu1g02248 205 NCBIfam small GTP-binding protein domain 29 133 IPR005225 GO:0005525
Vimu1g02248 205 Pfam Elongation factor Tu GTP binding domain 28 134 IPR000795 GO:0003924|GO:0005525
Vimu1g02248 205 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 194 IPR027417 -
Vimu1g02248 205 Gene3D - 12 200 IPR027417 -
Vimu1g02248 205 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 28 195 - -
Vimu1g02248 205 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 169 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02248 Vimu-Chr1 32432912 32437883 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02248 29 93 Eukaryotic Initiation Factors Gene Family AT1G56070 47.692 3.18e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02248 K02355 - gmx:100783315 300.056