Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02241 ATGGCGAGCTTACTAAGCTCTTCACCCATAGATGCAATCATGGACGACCCTGATTTCCTCGACTTATCCAAACGCAGCATCACCACAAGTTCTTCCTCCCAGGAAGACTGGATCAACCTTTGGTCCCCTCTCGTCGACTGGGGATCCCTCGCCGCCGGCGAAGACAATTTTCAAACCCTTATTGACTCCATCGCCGCCCATGAAGACGACGTCGTTTCCACCCCTGATCAAACCATAGCCCAAGACTCCGACTTAAGTAGCCACGACGAGAAGGGCCTCCGCCTGGTGCACCTCCTCATGGCGGCGGCGGAGGCCCTCACCCCCGGCACCGAGAGCCACCACCTGGCTCGAGTGATATTGGTTCGGCTCAACGAGTTGGTGTCCACCGCCCACGGCACCAACATAGAAAGACTCGCGGCGCACTTTAGCAGCGCGCTGCAAAATCTGCTAGATGGCGCCGGGAGTGCGCACAGCATAACCACCGACACCCCCAATCCCACGGACACGCTCACCGCGTTCCACTTTCTCCAGGACATGTCTCCTTACGTCAAGTTCGCTCATTTCACCGCCAACCAGGCCATCTTAGAGGCCGTAGCTCACGAAAAACGGGTCCACATCGTCGACTTCGACGTCACCGAAGGAGCCCAATGGGCATCCCTAATGCAGTCCCTCTCGTCAAGAAGCACCGGCCCACCTGGCCCACACCTCCGCATTACCGCATTGTCCAGAGGCTCCACCTCTGGACGGAGATCCATCGCCACCGTTCAGGAAACCGGACGGAGGCTAACGGCGTTCGCGGCATCCGTGGGGCAACCGTTTTCTTTTCACCAATGTCGGTTGGATCCTGACGAAACGTTTCGACCTTCCTCACTGAAACTGATTCGCGGCGAGGCCTTGGTCTTTAACTGCATGCTGCACTTGCCGCACCTGAGTTTCCGAGCCTCAGGTTCGGTTGCTTCGTTTCTGAAAGGTGCGAAGGAGTTGAACCCGAGGGTTGTAATGGTGGTAGAGGAAGAGGTGGCGCGCGGTGGAGATGCGGGCTTTGTGGGCCTGTTTATGGATTCGCTGCAGCACTACTCGGCGGTGTTTGATTCGCTGGAGGTTGGGTTTCCCATGCAGAAATGGGCCCAGGCTTTGGTGGAGCGCGTGTTTTTGGGCCCAAGAATAGCAAATTCTGTGAGCCTTATGTACCGGAGTGGAGGTGAGGACAGAGGATCGTGGGAGGAGTGGTTGGCTGCGGCGGGGTTCAGGGGAGTTCCCGTAAGCTTCGCTAATCACTGCCAAGCGAATCTGTTATTAGGACTGTTTAACGATGGATACAGAGTAGAGGAGATGGGGAACAATAAATTGGTGTTGGGTTGGAAATCACGCCGTTTGATATCAGCCTCTGTTTGGACTTCAAACTCTTGA 1410 0.561 MASLLSSSPIDAIMDDPDFLDLSKRSITTSSSSQEDWINLWSPLVDWGSLAAGEDNFQTLIDSIAAHEDDVVSTPDQTIAQDSDLSSHDEKGLRLVHLLMAAAEALTPGTESHHLARVILVRLNELVSTAHGTNIERLAAHFSSALQNLLDGAGSAHSITTDTPNPTDTLTAFHFLQDMSPYVKFAHFTANQAILEAVAHEKRVHIVDFDVTEGAQWASLMQSLSSRSTGPPGPHLRITALSRGSTSGRRSIATVQETGRRLTAFAASVGQPFSFHQCRLDPDETFRPSSLKLIRGEALVFNCMLHLPHLSFRASGSVASFLKGAKELNPRVVMVVEEEVARGGDAGFVGLFMDSLQHYSAVFDSLEVGFPMQKWAQALVERVFLGPRIANSVSLMYRSGGEDRGSWEEWLAAAGFRGVPVSFANHCQANLLLGLFNDGYRVEEMGNNKLVLGWKSRRLISASVWTSNS 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02241 469 ProSiteProfiles GRAS family profile. 86 466 IPR005202 -
Vimu1g02241 469 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 82 462 IPR005202 -
Vimu1g02241 469 Pfam GRAS domain family 95 466 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02241 Vimu-Chr1 32335253 32338073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02241 85 465 GRAS Transcription Factor Family AT3G03450 34.439 6.04e-56 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu1g02241 GRAS 4e-101 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02241 - - pvu:PHAVU_008G165200g 833.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02241 1 32335253 32338073 Vimu1g02241 1 32335253 32338073 ECH