Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02239 ATGCCACTCAATCGTGGCCAAAGCCAAACCACAAGGTGGTATCATCAGCTATGCTTTGTTCCCACTAGTTCAGATAGTTCAGATGACTCGGACGTAGAATCTGTAATCATTACACCAACTACTACAATTACAACTAGTAGCACATGGCAAGAACTTTCTCCGCCGCTATCACCACTGCCGCCACCACCACCGCCACCACCACCGCCATCACGACTGCCACCACCACCACCAAATCCTGAACCTCAAATGGATTGGCGCTTTCCACTACCACCGCCACCACCAGATTTTGTACGGCCACTGTTGCTGCAACAGCAGCCTGATCTCAGTGGGGTTTGGGCTATTCTTAACGAAGAAGTACAGCAGGATAGGCTTCAATCTCCCAATATAAGTCATGTGTTTGAAGGTGATAAAAGTGGGTGCTCAACGATTGCCATGAATGGCCTTAGCAGGGTAAGAGTATTAGACACAGATAAACTCTTTCTCTGTCCCATTTGCATGGATCAGTTTAAAGTGTGTGATCAAGCATACCGGTTACCCTGCACCCACACCTATTGTTCCGAATGCATTCTTCGTTGGCTTAACAGCAGCAAAACATGTCCAGTTTGCAGGCTTCAATTGAATGGTTATAGTTTTGATAGCATAGATGATAATAATAATAATAATAATAATTTGAACTCGCATGTTGAATTTCTACCAACGTCATTGTCTTCACCACCATCACCACACTTTCGTTCTCCTCCGCGCCCGGAGTACCTCGTAGAATCCTCTCTCAACATTACAGCAGGTGTAGAGAACAGTGCAAGTGATAACTCAGATGAAGCTGATTATGATAGTGCATGTGATGAGCTAGGTGATTCTCAAGAAAATGGTTTTTCTCATACTGCTAATGATTTATTACAGTAA 903 0.443 MPLNRGQSQTTRWYHQLCFVPTSSDSSDDSDVESVIITPTTTITTSSTWQELSPPLSPLPPPPPPPPPPSRLPPPPPNPEPQMDWRFPLPPPPPDFVRPLLLQQQPDLSGVWAILNEEVQQDRLQSPNISHVFEGDKSGCSTIAMNGLSRVRVLDTDKLFLCPICMDQFKVCDQAYRLPCTHTYCSECILRWLNSSKTCPVCRLQLNGYSFDSIDDNNNNNNNLNSHVEFLPTSLSSPPSPHFRSPPRPEYLVESSLNITAGVENSASDNSDEADYDSACDELGDSQENGFSHTANDLLQ 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02239 300 SUPERFAMILY RING/U-box 161 207 - -
Vimu1g02239 300 MobiDBLite consensus disorder prediction 20 53 - -
Vimu1g02239 300 Coils Coil 299 300 - -
Vimu1g02239 300 MobiDBLite consensus disorder prediction 20 90 - -
Vimu1g02239 300 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 238 IPR013083 -
Vimu1g02239 300 ProSitePatterns Zinc finger RING-type signature. 180 189 IPR017907 -
Vimu1g02239 300 MobiDBLite consensus disorder prediction 54 90 - -
Vimu1g02239 300 ProSiteProfiles Zinc finger RING-type profile. 162 203 IPR001841 -
Vimu1g02239 300 Pfam Ring finger domain 162 203 IPR001841 -
Vimu1g02239 300 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 126 206 - -
Vimu1g02239 300 MobiDBLite consensus disorder prediction 285 300 - -
Vimu1g02239 300 SMART ring_2 162 202 IPR001841 -
Vimu1g02239 300 MobiDBLite consensus disorder prediction 262 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02239 Vimu-Chr1 32314542 32315444 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02239 144 221 C3H Transcription Factor Family AT1G68180 37.037 9.45e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02239 - K11982 vum:124826385 431.795