Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02237 ATGGTTAAGCCAGAGAAGAAGATCAACACAGAATCATCATCAGCAGCAGCAGCAGCATCAAGTGAGAACAAGAAGAAGTTCAAGGGAGTGAGAATGAGAAGCTGGGGCTCATGGGTGTCAGAGATTAGAGCACCAAACCAAAAAACTAGAATATGGTTGGGATCTTATTCAACTGCTGAGGCAGCAGCAAGAGCCTATGATGCTGCACTACTTTGCCTTAAAGGCTCCTCAGCCAATCTCAACTTCCCTTCAAGCTCATCCTCACACTACATTCCTCAAGACACTACTGTCATGTCCCCAAAATCAATCCAAAGAGTGGCTGCAGCTGCTGCCAACAACTTTTTAGACACTGCCATTGCTACCACCCCATCTTCTCCTCCTCTTGCTTCAACATCTTCCTCTTCATTCGTCTCCTCCCCATCAACCTCAGACCAAATTGACGATGATGTCTCACTTCTGTCACCATTTGGGGCTTACACTCCTCCTCCACCTTCGGTTAACTGTGATCAAGCAAATGAATCAATGGCTATGATGGAATATTGGTACGACTTGGAGGCGTTACAATCACCCAAGTATGTTGAGCAAATG 588 0.4592 MVKPEKKINTESSSAAAAASSENKKKFKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANLNFPSSSSSHYIPQDTTVMSPKSIQRVAAAAANNFLDTAIATTPSSPPLASTSSSSFVSSPSTSDQIDDDVSLLSPFGAYTPPPPSVNCDQANESMAMMEYWYDLEALQSPKYVEQM 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02237 196 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Vimu1g02237 196 CDD AP2 25 85 IPR001471 GO:0003700|GO:0006355
Vimu1g02237 196 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 147 - -
Vimu1g02237 196 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Vimu1g02237 196 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Vimu1g02237 196 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700|GO:0006355
Vimu1g02237 196 MobiDBLite consensus disorder prediction 123 147 - -
Vimu1g02237 196 MobiDBLite consensus disorder prediction 1 28 - -
Vimu1g02237 196 FunFam ethylene-responsive transcription factor ERF014-like 25 85 - -
Vimu1g02237 196 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Vimu1g02237 196 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Vimu1g02237 196 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02237 Vimu-Chr1 32298274 32299134 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02237 27 153 AP2-EREBP Transcription Factor Family AT1G21910 61.069 3.39e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu1g02237 AP2 8.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02237 - - gmx:100813313 247.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02237 1 32298274 32299134 Vimu1g02237 1 32298274 32299134 ECH