Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02229 ATGATGACTAACACTTACATACATTGCAGTTTGGATGGAAATCTCCGTCCTTATCAGACAGGGTCATGCAAGAGCAACCACAAGAAGTTTATTATTCCATTAGTGGCATCTATAACAACATGTGTTGCAGTGGTCCTCACAATATCTACCATAATTATGGTGATATGGAGACTTAGAAAAAAGGGAAAAGTGATATCTTCAATTTCTGTGAAAGATGAGCCACTGAAATCAGCAAATCAAGTATTTTCTTACTCAGACATTCGTAGAATCACTAATAATTTCACAACAATGATTGGGAAAGGTGGATTTGGTAAGGTATACCTAGGTACTTTAGAGTGTGGCAAAAGAGTTGCTGTGAAGATACTTTCTTCACCATCAGCACAAGGGTATAAGGAATTTCAATCAGAGGCAAAACTGTTGATGCATGTTCATCACAGAAACGTGGTTTCTCTTGTGGGATACTGTGATGAAGGGTTAGACTATTTGCATAATGGATGTAAGCCACCCGTAATTCACAGAGATTTGAAAACATCCAACATCTTACTAGATGAAAATATGCATGCCAAAATTTCAGACTTTGGGATGTCTAAAATGTTTGCCAATGATAATGACACTTATGTCACGACTTACCCAGCAGGCACACCAGGTTACCTTGATCCTGAGTAA 666 0.3799 MMTNTYIHCSLDGNLRPYQTGSCKSNHKKFIIPLVASITTCVAVVLTISTIIMVIWRLRKKGKVISSISVKDEPLKSANQVFSYSDIRRITNNFTTMIGKGGFGKVYLGTLECGKRVAVKILSSPSAQGYKEFQSEAKLLMHVHHRNVVSLVGYCDEGLDYLHNGCKPPVIHRDLKTSNILLDENMHAKISDFGMSKMFANDNDTYVTTYPAGTPGYLDPE 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02229 221 FunFam Os07g0541700 protein 132 214 - -
Vimu1g02229 221 Pfam Protein tyrosine and serine/threonine kinase 94 156 IPR001245 GO:0004672|GO:0006468
Vimu1g02229 221 SUPERFAMILY Protein kinase-like (PK-like) 77 221 IPR011009 -
Vimu1g02229 221 ProSitePatterns Protein kinases ATP-binding region signature. 98 120 IPR017441 GO:0005524
Vimu1g02229 221 Gene3D Phosphorylase Kinase; domain 1 74 159 - -
Vimu1g02229 221 SMART serkin_6 92 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02229 221 Gene3D Transferase(Phosphotransferase) domain 1 160 221 - -
Vimu1g02229 221 FunFam receptor-like protein kinase FERONIA 58 162 - -
Vimu1g02229 221 ProSiteProfiles Protein kinase domain profile. 92 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02229 221 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Vimu1g02229 221 Pfam Protein kinase domain 157 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02229 221 PANTHER OS07G0107800 PROTEIN-RELATED 24 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02229 Vimu-Chr1 32162845 32170392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02229 24 221 Receptor kinase-like Gene Family AT2G19230 41.667 1.58e-56 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vimu1g02229 Pkinase 1.9e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02229 - - vra:106763618 253.832