Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02223 ATGGAATGTTGTAAGAAGGTGTATGAGTGGTTATGCAATGCAAAAGCATATCTCATAATATTGAGCTTGCAATTTGGGTCTGCTGGCATGTACCTTATCACCATGGATGCTCTCAACAAGGGCATGAGCCATTATGTTTTTGTTGTTTATCGCAATATCATCGCCACTGTAGCTCTTGGTCCATTCGCATTTTTTCTTGAAAGGAAAGTTAGGCCGAAGATGACAATTCGGATATTTTCAGAGCTTATGGCAGTGGCTTTTGTCGAGATAATACTTGATCAATGCTTCACCTTCTTGGGAATGAAGTACACCTCAGCATCATTTGCATCTGCGGTGATGAACTCCGTACCCTCCATTACCTTTGTACTAGCAATCATTTTTAGATTGGAGCGTATGAAGCTTAAGGAGGTTGGATGCTTAGCCAAAATGATTGGCACTGTGGTTTCTCTTGGAGGCGCTTTTCTAATGGCACTGTACAAAGGTCCTATCCTTAATATTGCAGGCTCATCAGCCACCAACGTAGGCCAGCCTGAGAATGTGAACGACCCTTCTGGAAATCATTGGCTCAGTGGTGCATGTTTTCTCCTCATAGGCTGTGCTGGCTTCGCTGCTTTCTACATATTACAAACTATAACATTGAGAAAGTACCCAGCAGAAATGTCCCTAGCAACTTGGGTTTGCTTTCTGGGTGCACTTCAGAGCGGTGTCCTTACAATTTTCATGGAGCGCAATACCCATGTCTGGTCTGTGGGCTGGGATTCTAGGCTTCTTGCTTATGCATATTCGGGAATAGTAACATCAGCAATCCAATTTTATGTGCAAGGCATGGTAATTAAAACCACAGGGCCAGTGTTTGTGACTGCATTTAATCCCCTGCGTATGATCATAGTGACAGCCTTGGCCTGCATAGTCCTCTCGGAGAAACTCCACCTTGGAAGCATTATGGGAGGAGTTGTGGTAGTAGTTGGGCTTTACCTAGTTGTATGGGGAAAATCTAAAGAACAAAAGAAGCATTCGATGCCAGCGTCCCCTGAAAAGGAGACCCTGCAACGCCAGCAACAGCTACCACTTAGTGTACTCAAAAGTGATGACAACAATGATAACAAACTTCAAATGGTCATAATTGGAGACAAAAACCACAACATGGAAGAAGGCAGAACAGTGAATATAGAGAACCAGCAACAGTGA 1188 0.4369 MECCKKVYEWLCNAKAYLIILSLQFGSAGMYLITMDALNKGMSHYVFVVYRNIIATVALGPFAFFLERKVRPKMTIRIFSELMAVAFVEIILDQCFTFLGMKYTSASFASAVMNSVPSITFVLAIIFRLERMKLKEVGCLAKMIGTVVSLGGAFLMALYKGPILNIAGSSATNVGQPENVNDPSGNHWLSGACFLLIGCAGFAAFYILQTITLRKYPAEMSLATWVCFLGALQSGVLTIFMERNTHVWSVGWDSRLLAYAYSGIVTSAIQFYVQGMVIKTTGPVFVTAFNPLRMIIVTALACIVLSEKLHLGSIMGGVVVVVGLYLVVWGKSKEQKKHSMPASPEKETLQRQQQLPLSVLKSDDNNDNKLQMVIIGDKNHNMEEGRTVNIENQQQ 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02223 395 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 160 - -
Vimu1g02223 395 SUPERFAMILY Multidrug resistance efflux transporter EmrE 226 333 - -
Vimu1g02223 395 PANTHER WAT1-RELATED PROTEIN 18 340 IPR030184 GO:0016020|GO:0022857
Vimu1g02223 395 Pfam EamA-like transporter family 190 328 IPR000620 GO:0016020
Vimu1g02223 395 Pfam EamA-like transporter family 27 157 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02223 Vimu-Chr1 31931335 31934921 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02223 15 367 Nodulin-like Gene Family AT1G44800 45.070 3.37e-112 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02223 - - gmx:100813852 654.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02223 1 31931335 31934921 Vimu1g02223 1 31931335 31934921 ECH
Vimu7g03756 7 33010047 33011923 Vimu1g02223 1 31931335 31934921 ECH
Vimu10g02173 10 31907391 31908536 Vimu1g02223 1 31931335 31934921 ECH