Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02213 ATGAATTCTACAGAGAAACTCACTCCAAGAAAAAGAGCATCCAAGAATAGCACACCGAAAAAGAATACCACACCGAAAAAGAATAGCACGCCAAAGAGGAAGAGCACGCCGAATAAAACACCTAACAAAACTAAATCAGTTGGTGCTTCACCAGTGTCTGCTCAGAAGATTGATCTGAGGTTGGAGGCAAAGCTGTCTGCGGAGGTTAAAATTGATGCGAAGGTGTACGCTGGACGGAGAATACATCCCTTTTTTTCCTTGTGGAAAGAGGAAAATGAAAGACGTCGACAAGATTTATTGGCTAGGAGGAAAGCAAAAGGAATTAGAGATTCCATCCATGTATTTGAAGATGTTCAGAATAATGTCTCACCCATTGACTGGAGTGACTGGACATTTTTGGATAATACCACAGTTGCATATTTGGACAGCCAGAATTCAAATTTATCTTTTATGGAGGATTCGGTTGAATCCTTAAATTTTGATAACATACATAATGCGTCTGAAGAGGATGTCATGGATTGTCCAAGTCAACTTTCTATAGAGTCAGATAATAAACTGGACATATCACTACCAAATTCAGAAGTTAAATGTCTTTTGAAGACCGAAGATGTCGATGTGGACCTGAACTTGGAGGTGAATGAAAATACAGGATACAAGGATATTCAGGAACCACCAACAAGAATAAGTTCTTACCATAATTGTGAAGGTAACAACATCTTATGGATAGACAAGTACAAGCCAAAAAAAGCCTCTGAGGTGTGTGGTAATGAAGAGGCTATGAATTCCTTACGTGACTGGTTACATCTTTGGCATGAAAGACTTTCTCAGTGCAGAAAAAGTTCCTATTACAAAGGTCGAAGTGATAGACAAGATGCTTCAGAAGACATCCATCAGGGTCGTCTGCAGAGTGTTCTCTTGATTACAGGACCAATTGGGAGTGGCAAGTCGGCAGCTGTCTATGCCTGTGCCCAAGAGCAAGGGTTTAAAGTTGTAGAGATCAATGCATCAAGTTGTCGAAACGGAGCTGCTATCACTGCTATCAAGAATAAAATAGAAGAACCTCGGGCAGGCAAAATCACAAGTTGTTTCAAACCTGTGAAGTTGCTTCCTGCTTCTGATGATGAAGCCCGCCAAACTTTAATTCTAGTTGAGGATGTGGACATCATTTTTCCTGAAGATCGTGGTTGTATTACTGCCATACAACAACAATTTTCGGCCACCAAAAAATGGCCTATTATATTTACCAGCAATAGTAAGATGACTTATTAA 1269 0.4003 MNSTEKLTPRKRASKNSTPKKNTTPKKNSTPKRKSTPNKTPNKTKSVGASPVSAQKIDLRLEAKLSAEVKIDAKVYAGRRIHPFFSLWKEENERRRQDLLARRKAKGIRDSIHVFEDVQNNVSPIDWSDWTFLDNTTVAYLDSQNSNLSFMEDSVESLNFDNIHNASEEDVMDCPSQLSIESDNKLDISLPNSEVKCLLKTEDVDVDLNLEVNENTGYKDIQEPPTRISSYHNCEGNNILWIDKYKPKKASEVCGNEEAMNSLRDWLHLWHERLSQCRKSSYYKGRSDRQDASEDIHQGRLQSVLLITGPIGSGKSAAVYACAQEQGFKVVEINASSCRNGAAITAIKNKIEEPRAGKITSCFKPVKLLPASDDEARQTLILVEDVDIIFPEDRGCITAIQQQFSATKKWPIIFTSNSKMTY 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02213 422 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 5 419 IPR004582 GO:0006281
Vimu1g02213 422 MobiDBLite consensus disorder prediction 18 51 - -
Vimu1g02213 422 Pfam ATPase family associated with various cellular activities (AAA) 305 393 IPR003959 GO:0005524|GO:0016887
Vimu1g02213 422 MobiDBLite consensus disorder prediction 1 52 - -
Vimu1g02213 422 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 419 IPR027417 -
Vimu1g02213 422 Gene3D - 239 421 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02213 Vimu-Chr1 31793334 31799568 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02213 241 400 Core DNA Replication Machinery Family AT5G22010 27.778 3.07e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02213 K26118 - vum:124821504 702.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02213 1 31793334 31799568 Vimu1g02213 1 31793334 31799568 ECH