Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02205 ATGGCTCACAATCACAACTCCACCGATTCTCCTCTCTCTCGTCGTATAGTTCGTGCCTTCCTCCACTTCCTAAATTCTGTTGAACCGGGTCCCGGGGTTGATGCTGAGGGGATTCAGGTTGCTAGAGAGTGTTTGACAGAGGCTTTCAAACTTAATTCTTCTTCTGTGGATGGGGATGATGGGAAATCTGAATCTTTGATTGACATATTCAAGTCTCTTGAAGCTAAGAAGCAAAATGAAACTAGAAAGTCGGATGTTGATACTCAATGGAATTGTGCGAATGCTTCCAGTTCATTCTCTGGTGAGAATCCTGCTCGTGGGATGAATCATTCTGAGGCGTCAAAATCTACGGTTGAAGATTCAACACAGGAACCTTGTACTTTTGCATCTAAAGATGAACTGTGCGGACAATTCTTTGCTGCTTTGGAGAAAAATCACTATTTCAGGAGAAATACTGATGGGAGTGATGACATAGTGCAACTGGAGAAAGCATGTTCTTTTTTTGATGAAGGTTGTAAGGAGATGGTAAGATCTGGTTGTCAGCAGTTCTGTTTGATGAGTTTGGCCGAATCACTAAAAACATTAGGTAACAAGGCAATGCAATCTAAGAAATACAATGATGCAATTGAGTTGTATAATTGTGCTGTTGCACTCAATGAAAAGAATGCTGTTTACTTTTGTAACAGGGCAGCTGCTTACACTCAGATTAACAAATATTCGGAAGCAATTCAAGATTGTCTCAGATCTATCAAGATTGATCCAAACTACAGCAAGGCATACAGTCGTCTGGGTTTGGTTTATTATGCTCAAGGAAATTATAGAGATGCTATTGATAAAGGGTTTAGAAAAGCGTTGCAGTTGGATCCAAATAATGGCTCTGTCAAAGAAAATATCCGGGTGGCTGAGCAGAAATTATTCGAAGAGCAAAACCGTGCACATCACAACCAGAATCCAACAAGATCATCGCAAGAAGGTCCAAACCAATCTGCACAAGGATCAGGAAGCACACCCCTGCCACCCACATTTTCTTCTCTGCCATTTAACCCCAGCCAAATGGCAAACATGCTGAGGCACATGACCTCAAACGCTACAAATTCACAACAGAGGCCACAGACTGAGGAATGGGAACAAGAAACTACTAGTGAAATTAGATTTGGGGCAGATATTTTAAACATGGAGCAAATTCCGGAGAATCTAACAGGGGCCGTTCAATCTATGATGGAAATTTTATCTAGGACTGTAAACCCGGGGCAACCACCTGAGGATCAAACCAATCCAAGAACAGGACCAAACTAA 1296 0.4174 MAHNHNSTDSPLSRRIVRAFLHFLNSVEPGPGVDAEGIQVARECLTEAFKLNSSSVDGDDGKSESLIDIFKSLEAKKQNETRKSDVDTQWNCANASSSFSGENPARGMNHSEASKSTVEDSTQEPCTFASKDELCGQFFAALEKNHYFRRNTDGSDDIVQLEKACSFFDEGCKEMVRSGCQQFCLMSLAESLKTLGNKAMQSKKYNDAIELYNCAVALNEKNAVYFCNRAAAYTQINKYSEAIQDCLRSIKIDPNYSKAYSRLGLVYYAQGNYRDAIDKGFRKALQLDPNNGSVKENIRVAEQKLFEEQNRAHHNQNPTRSSQEGPNQSAQGSGSTPLPPTFSSLPFNPSQMANMLRHMTSNATNSQQRPQTEEWEQETTSEIRFGADILNMEQIPENLTGAVQSMMEILSRTVNPGQPPEDQTNPRTGPN 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02205 431 ProSiteProfiles TPR repeat profile. 189 222 IPR019734 GO:0005515
Vimu1g02205 431 ProSiteProfiles TPR repeat profile. 223 256 IPR019734 GO:0005515
Vimu1g02205 431 Pfam TPR repeat 232 271 - -
Vimu1g02205 431 ProSiteProfiles TPR repeat profile. 257 291 IPR019734 GO:0005515
Vimu1g02205 431 SUPERFAMILY TPR-like 188 302 IPR011990 GO:0005515
Vimu1g02205 431 Gene3D Tetratricopeptide repeat domain 186 340 IPR011990 GO:0005515
Vimu1g02205 431 FunFam Small glutamine-rich tetratricopeptide repeat-containing protein alpha 2 76 - -
Vimu1g02205 431 MobiDBLite consensus disorder prediction 96 121 - -
Vimu1g02205 431 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 185 335 - -
Vimu1g02205 431 Gene3D Immunoglobulin FC, subunit C 1 77 - -
Vimu1g02205 431 PANTHER LD24721P 3 424 IPR047150 -
Vimu1g02205 431 MobiDBLite consensus disorder prediction 310 349 - -
Vimu1g02205 431 SMART tpr_5 257 291 IPR019734 GO:0005515
Vimu1g02205 431 SMART tpr_5 189 222 IPR019734 GO:0005515
Vimu1g02205 431 SMART tpr_5 223 256 IPR019734 GO:0005515
Vimu1g02205 431 MobiDBLite consensus disorder prediction 315 349 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02205 187 316 U-box Gene Family AT3G07370 26.119 3.44e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02205 K16365 - gmx:100799770 597.816