Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02179 ATGGCTTCCATCAACCAAACCATTTCCTCAACACCGGATCACTTAGTGAATCCGGCTCATCCTCTCTATTTGCATCCTGGTGAAAACCCAGCTTTGGTGCTTGTTTCCCCTCTTCTCACAGAGAGCAATTTCCATCAATGGGAGAGAGACATGGTTGTTGCCCTTGAAACCAAAAACAAAGAGCGCTTCATTCATGGCACTCTTCCCTGTCCACCCATCACAGACCCCCTGTATGAAACTTGGCGCAGATCTAATCGCATGGTAATGTCATGGCTCACTCGTTCCATGACCCCTTCCATCAAGCAATCCGTGATGTGGATGGATACGGCTTCCGAAATTTGGTGTGATCTCAAGGATTGCTTCTCTCATGCTGACAAATTTCGGATTTCTGACCTTCAGGATCAGATTCTTGCTTGTCGCCAAGGTGAATCTACTGTTTCTGAATACTATACCAAGTTGAAGATCTTGTGGAAAGAAATAGAGCTCTATCGTTGTGTGTTGACTTGTACCTGTTTGACACCTTGTGTCTGTGGCCTCCTTTCTAGACTTCACAAAGAACGCGAGGATGATTATGTGATTCGCTTTCTTCGGGGTCTCAATGACAATTATGCCCAAGTTCGTTCCCAAATCATGATGCTAGACCCCATGCCTTCCATTGTTAAAACATTTTCCATGGTCCTTCAGCATGAACGTGAATTTATTGGCATTCTTCCGAAGCCCTCTGTTCCCGATTCCTTGGTTTTTGCTGCCCTCTCCACTGACCCACGTTTTCCTTCTTTCACAAGGCCCACTTCTGCTACCAGCAAGACCATTTCCAGGAACAATAAATTCTGTGAGCATTGCAAGAAAACCAATCATACCATCGAGAATTGCTACTTTCGCATTGGTTTTCCTGTTGGTTACAAGAAGTCAAAACCCACGACTAAAACTTCTGCCAGTTTGGTTACTGTGGATCCTTCTGCTTCTCCTCAGCCATTGAATTTGGATGGTAATCCCACCAATGACCAGTTCACTTTCTCTAAGGATCAGTATCAAGCGATCTTGGCCTTGCTCCAACATACTAAGGATCATTCATCCTCTGTGAATCATGCTTCTGTTCATAATTCAGGTACATCCTTTTCTTTTTCTCATTGGATTATTGATAGTGGTGCTATTGACCACATTTGTCCAATTAAGTCTTTATTTCATAACCTTCACCCCATTACACCAATCCATATCAATCTGCCTAATCACACTATTGTCATTGCCTCATTTTCAGGGACTATTCATATAGGTGCTTTACTACTTGTTGATGTGCTTTTTGTACCTGAATTCTCTGTTTCTCTCATTTCAGTTCCTAAACTTGTTTCCACTATCAATTGCATGGCAGTATTTTGTGATTCTCACTGCTTATTTTTTCAGAGGTCTCACCTCACGATGATTGGAGCAGCTAGGAAGGTTGATGGTTTGTACTGTTTTGAAGAATCATCCAACTTGCATCACAACAAAGTTTTACAATCTTCTCCCATCACCGAATCAAAACCTTCTGTTGTAAATGCAGTTCATAACAGTGCCCTGTGGCATCATAGACTAGGACACACTTCCAATTCCATTTTACAATTTTTATCTTCTCAGCATTCTGATATTACATATCAAAACTGTATGCCTTGTGACATTTGTCACTTTGCCAAACACAAGAAATTACCCTTTCCTATTAGCACATCCAAAAGCTCTCATCTCTTTGAACTGTTACATGCTGACATTTGGGGTCCATTGCAAATTGCTTCAATTGATGGTTTTACATATTTTTTAACACTTGTTGATGACTACAGTAGATTCACATGGATTCATCTTTTAAAATCCAAAGCTGAAGTCAAAACTGTTCTTCCTAAATTCATCATTTTCATTGAAAATCAATTTGACACAAAACTAAAGAGAATAAGGTCCGACAATGACAAGGAGTTTTTCTTAAATGATTTCTTTTCTTCCAAAGGTATTTTTCATGAAACCTCATGCATTGAATCTCCTCAACAGAATGGGATAGTTGAGCGCAAACATCAACATATTTTGAATGTAGCTCGCGCCTTACTTTTCCAATCTCACTTGCCTTCTGTTTTCTGGTCATACGCAATTAAACATGCTGTCCATCTCATTAATAGGCTCCCTACTCCATTTCTGAAACATCAATCTCCTTATCAATATGTTTTTGGAAGCCTCCCTGATTTTCGAAAACTTAGAGTTTTTGGTTGTTTAGCTTTTTCTAACACTATCATGGCTGGTAGAACTAAGTTAGAAAAACGTGCCTCTAAGTGCATTTTTCTTGGTTTCAAACCTGGGGTTAAAGGGTATCTTTTATATAATCTTCATAACAAAAATTTTCTTGTGTCCCGCAATGTCATTTTTTATGAGTTTCATTTTCCTTATGCTCCTGAGTCTCAATCCATTTCTCATCACCACAACACTGGTCTTACTGCATCACAACAGATTTTTGATTCTTTAATTGCTTTTGATATACCTGTTTATGGTGTTTCCTCTCTCAATACTGGTACTACTGATGTTGAACCAGTTATGCAATTCAATAATGATTCTAACAATGTTGTGCAAACCATTGATCCTCTTCCTAGAGTTTCCAATCGACAGAGGAAGCCTCCTGCTTACTTGTCTGCGTATGATTGCCCTACTCTTTCCTCTACTAACATTTCATATAGTACTCCTTATCCATTACATTCATATTTATCATATTCCAATTGTTCTAATTCTCACACTGCTTTTTGCATGTCCTTATCTGCCACTATCGAGCCATCTTCCTTTAAGGAAGCTTGCCAGCATGATCATTGGCAGCAGGCTATGATTGCGGAAATACAAGCTCTGCAGAGAAATGGCACCTGGTCATTGGTCAAGTTACCACCAAATAAAAAGGCTGTTGGTTGCAGATGGGTCTATAAGACTAAGTTGAATGCAGCTGGTTCCATAGAGAGACATAAGGCACGTCTTGTTGCCAAAGGATTTACACAGACTGAGGGCATGGATTTTTTTGAGACCTTCTCCCCTGTTGTGAAGCTCACCACTGTCAGGTTTCTAATTTCTATTGCTGTCTCTCGCCATTGGTCTTTATATCAACTTGACGTTGATAACGCCTTTTTACATGGTGATTTAAATGAAGATGTTTACATGAAACCTCCCCCGGGATTGCTTCTTCCTGAACCTCATCTAGTTTGTAAATTGCACAAGTCTCTTTACGGCCTTAGACAAGCTTCTCGACAGTGGAATTCCAAGCTTACATCTGCATTAATTTTCTATGGGTTCTCACAGAGTTCTGCTGATCATTCTCTGTTTATCTATCATTCCTCTAACATGCAGGCCATTAATGATGTCAAACAATTTTTACATCATAAATTCAGCATCAAAGATTTGGGTTCTCTCAAATTCTTTCTTGGTTTTGAGGTTGCTCGATCACAACAAGGCCTTGTCCTAAATCAAAGAAAATATTGCTTGGAAATCTTGTCAGAATTTGGTCTAACTGGTTGCAAACCTGCCATTTCTCCTTCGAATCCCACTGTTAAGCTTACGGATGATGAAGGTTCTCTTGTTTCAGATCCCACTGCTTACAGAAGATTGATTGGTAAGCTGCAATACTTAACTAATACTCGTCCAGACATCTCCTTTGTTGTTCAACAAGTTAGCCAATTCATGTCCAAGCCACGACAATCTCATCTCCATGCTGCTTTCAGAATCTTGAGATACCTCAAAAGTTGTCCAGGTCTTGGTTTATTTTATCCTTCCTCCAACCCTCACCGAATTCAAGCTTTTTCGGATTCCGATTGGGCTACTTGTTCCCTCACTCGCAAGTCCATCACAGGATATTGTGTCTTTTATGGCCACTGTCTTATTTCCTGGAAATCTAAGAAACAATCCACGGTTTCTAGAAGCTCTACTGAAGCTGAATATAGAGCTTTGGCTTCTGTTGCTTGTGAACTGCAGTGGTTAAAATATATTGCTGATGACTTGCGCCTTAAAATTCCTCTTCCTTTTCCCACCTTTTGTGATAATCAGTCTGCAATTCAGCTGGCCAAGAATCCATCCTTTCATGAACGAACCAAACATATCGAAGTGGATTGTCATCTCATACGTGCTAAGATTCTTGATGGTCTCATTGTCATTTCACATGTTCCTTCCAAGCATCAATTGGCAGATATGTTAACTAAGACAAGTGACGACTTTGTCTGGCCTGTTGATACTGCATTCCTTGGTCGCTTTGTTATTGATGTTGAATTTCTTGACCTGAAGGCCTGCCCTGGGAATGGTGGAGTAACCAGATCTATATGGCCATCTGATGGAAAACTGCAAACTGTTGCAGATCAGAGCGCTCTCCGATGCTTGTCTCGCATGCTTGACGAGGCTATACATGCTGACCTCACCATCATTACTGCAGACGGTACTCTGAAAGCTCACAAGGCAGTTTTATCTGCTAGTTCTACAGTGTTCCATAGTTTGTATCTTAACAATGGTGATGAAGAAGATACATCTACGATCCACATGGAAGATATGTCTCAAGAATCCTGCAAGTCCCTCCTGAGTTACCTGTACGGTACTATAAACCAAGAAGATTTCTGGAATCACAGGCTTCCATTGCTTGGAGCAGCCAATAAATATGAGATTGGTGATCTCAAAGACGCCTGTGAAGAAAGCCTACTAGAAGATCTTAACTCGGCAAATGTTCTGGAGAGGCTAAATGACGCTTGGCTTTACCAGTTACACAACTTAAAGAAAGGGTGCTTCACTTTCTTATTTGATTTTGGTAAGATATATGATGTCAGAGATGAAATAAACACGTTTTTCCAACATGCTGACAGGGAGCTAATGCAGGAAATGTTTCAGGAAGTGCTTACAATTTTGAAATAG 4881 0.4026 MASINQTISSTPDHLVNPAHPLYLHPGENPALVLVSPLLTESNFHQWERDMVVALETKNKERFIHGTLPCPPITDPLYETWRRSNRMVMSWLTRSMTPSIKQSVMWMDTASEIWCDLKDCFSHADKFRISDLQDQILACRQGESTVSEYYTKLKILWKEIELYRCVLTCTCLTPCVCGLLSRLHKEREDDYVIRFLRGLNDNYAQVRSQIMMLDPMPSIVKTFSMVLQHEREFIGILPKPSVPDSLVFAALSTDPRFPSFTRPTSATSKTISRNNKFCEHCKKTNHTIENCYFRIGFPVGYKKSKPTTKTSASLVTVDPSASPQPLNLDGNPTNDQFTFSKDQYQAILALLQHTKDHSSSVNHASVHNSGTSFSFSHWIIDSGAIDHICPIKSLFHNLHPITPIHINLPNHTIVIASFSGTIHIGALLLVDVLFVPEFSVSLISVPKLVSTINCMAVFCDSHCLFFQRSHLTMIGAARKVDGLYCFEESSNLHHNKVLQSSPITESKPSVVNAVHNSALWHHRLGHTSNSILQFLSSQHSDITYQNCMPCDICHFAKHKKLPFPISTSKSSHLFELLHADIWGPLQIASIDGFTYFLTLVDDYSRFTWIHLLKSKAEVKTVLPKFIIFIENQFDTKLKRIRSDNDKEFFLNDFFSSKGIFHETSCIESPQQNGIVERKHQHILNVARALLFQSHLPSVFWSYAIKHAVHLINRLPTPFLKHQSPYQYVFGSLPDFRKLRVFGCLAFSNTIMAGRTKLEKRASKCIFLGFKPGVKGYLLYNLHNKNFLVSRNVIFYEFHFPYAPESQSISHHHNTGLTASQQIFDSLIAFDIPVYGVSSLNTGTTDVEPVMQFNNDSNNVVQTIDPLPRVSNRQRKPPAYLSAYDCPTLSSTNISYSTPYPLHSYLSYSNCSNSHTAFCMSLSATIEPSSFKEACQHDHWQQAMIAEIQALQRNGTWSLVKLPPNKKAVGCRWVYKTKLNAAGSIERHKARLVAKGFTQTEGMDFFETFSPVVKLTTVRFLISIAVSRHWSLYQLDVDNAFLHGDLNEDVYMKPPPGLLLPEPHLVCKLHKSLYGLRQASRQWNSKLTSALIFYGFSQSSADHSLFIYHSSNMQAINDVKQFLHHKFSIKDLGSLKFFLGFEVARSQQGLVLNQRKYCLEILSEFGLTGCKPAISPSNPTVKLTDDEGSLVSDPTAYRRLIGKLQYLTNTRPDISFVVQQVSQFMSKPRQSHLHAAFRILRYLKSCPGLGLFYPSSNPHRIQAFSDSDWATCSLTRKSITGYCVFYGHCLISWKSKKQSTVSRSSTEAEYRALASVACELQWLKYIADDLRLKIPLPFPTFCDNQSAIQLAKNPSFHERTKHIEVDCHLIRAKILDGLIVISHVPSKHQLADMLTKTSDDFVWPVDTAFLGRFVIDVEFLDLKACPGNGGVTRSIWPSDGKLQTVADQSALRCLSRMLDEAIHADLTIITADGTLKAHKAVLSASSTVFHSLYLNNGDEEDTSTIHMEDMSQESCKSLLSYLYGTINQEDFWNHRLPLLGAANKYEIGDLKDACEESLLEDLNSANVLERLNDAWLYQLHNLKKGCFTFLFDFGKIYDVRDEINTFFQHADRELMQEMFQEVLTILK 1626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02179 1626 SMART BTB_4 1463 1561 IPR000210 GO:0005515
Vimu1g02179 1626 Pfam Retrotransposon gag protein 90 201 IPR005162 -
Vimu1g02179 1626 ProSiteProfiles Integrase catalytic domain profile. 558 732 IPR001584 GO:0015074
Vimu1g02179 1626 Pfam GAG-pre-integrase domain 482 558 IPR025724 -
Vimu1g02179 1626 Pfam BTB/POZ domain 1456 1559 IPR000210 GO:0005515
Vimu1g02179 1626 CDD BTB_POZ_ZBTB_KLHL-like 1462 1544 - -
Vimu1g02179 1626 ProSiteProfiles BTB domain profile. 1463 1522 IPR000210 GO:0005515
Vimu1g02179 1626 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 953 1175 IPR013103 -
Vimu1g02179 1626 SUPERFAMILY Ribonuclease H-like 570 726 IPR012337 -
Vimu1g02179 1626 Gene3D Potassium Channel Kv1.1; Chain A 1437 1590 IPR011333 -
Vimu1g02179 1626 CDD RNase_HI_RT_Ty1 1261 1395 - -
Vimu1g02179 1626 PANTHER GAG-POL-RELATED RETROTRANSPOSON 547 1396 - -
Vimu1g02179 1626 Pfam Integrase core domain 574 669 IPR001584 GO:0015074
Vimu1g02179 1626 Gene3D - 565 740 IPR036397 GO:0003676
Vimu1g02179 1626 Pfam gag-polypeptide of LTR copia-type 25 71 IPR029472 -
Vimu1g02179 1626 SUPERFAMILY DNA/RNA polymerases 952 1367 IPR043502 -
Vimu1g02179 1626 SUPERFAMILY POZ domain 1447 1559 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02179 Vimu-Chr1 31153156 31162774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02179 860 1372 Receptor kinase-like Gene Family AT4G23160 46.468 1.78e-150 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vimu1g02179 RVT_2 1.4e-62 CL0027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02179 - - itr:116033393 1072.77