Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02177 ATGGGAGCAGCGTACGGAACTGCGAAGAGTGGGGTGGGAGTGGCGTCGATGGGTGTGATGAGGCCGGAGCTTGTGATGAAGTCGATAGTGCCGGTGGTTATGGCTGGAGTGTTGGGTATTTATGGGTTGATTATTGCGGTTATCATTAGCACCGGGATAAACCCCAAGGCTAAGTCTTACTATCTCTTTGATGGTTATGCCCACTTGTCCTCTGGCCTTGCCTGCGGCCTTGCTGGCCTCTCTGCCGGGATGGCCATTGGAATTGTTGGGGATGCTGGTGTTAGGGCTAATGCTCAGCAGCCGAAGCTGTTTGTTGGTATGATTCTTATTTTGATTTTCGCTGAAGCTCTTGCGCTTTATGGCCTCATTGTGGGTATCATACTCTCATCTCGGGCTGGCCAATCTCGCGCTGATTAA 417 0.5156 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02177 138 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 1 134 - -
Vimu1g02177 138 Pfam ATP synthase subunit C 70 128 IPR002379 GO:0015078|GO:0033177|GO:1902600
Vimu1g02177 138 Pfam ATP synthase subunit C 1 49 IPR002379 GO:0015078|GO:0033177|GO:1902600
Vimu1g02177 138 CDD ATP-synt_Vo_c_ATP6C_rpt2 62 129 - -
Vimu1g02177 138 FunFam V-type proton ATPase proteolipid subunit 1 135 - -
Vimu1g02177 138 NCBIfam V-type ATPase subunit C 1 94 IPR011555 GO:0033179|GO:0046961|GO:1902600
Vimu1g02177 138 CDD ATP-synt_Vo_c_ATP6C_rpt1 1 53 - -
Vimu1g02177 138 PRINTS Vacuolar ATP synthase 16kDa subunit signature 80 106 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vimu1g02177 138 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 130 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vimu1g02177 138 PRINTS Vacuolar ATP synthase 16kDa subunit signature 3 27 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vimu1g02177 138 PRINTS Vacuolar ATP synthase 16kDa subunit signature 29 53 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vimu1g02177 138 Gene3D - 1 135 IPR035921 -
Vimu1g02177 138 SUPERFAMILY F1F0 ATP synthase subunit C 60 129 IPR035921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02177 Vimu-Chr1 31141582 31145331 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02177 1 138 Primary Pumps ATPases(2) AT4G38920 99.275 2.02e-92 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02177 K02155 - psom:113288790 241.121