Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02173 ATGGCAAATATGCTGTGTGTCTTGCTCATGATTGGAGCGATGATGTTCGGAGTAAGAGCTGAGCCAACGGAAGATAAACAAGCATTGCTTGATTTCCTTCACAACATTAGCCACTCTCATCATCTGATCAACTGGGACAAGAGCTCTTCTGTGTGCAAAAGTTGGATAGGAGTGACCTGCAACTCTGAGGAATCACATGTCATTGCCCTCCAACTGACCAGAACTGGATTGAGTGGTCCAATCCCACCCAACACTCTTAGCCGTCTCTCAGCGCTCCAAACTGTGAGTCTAGCCTCAAATAGCATAACTGGTTCTTTCCCTTCTGATTTCTCTCAGCTAAAGAATTTGATCTATCTGTATCTCCAATTCAACAAATTTTCTGGTCCATTGCCATCTGACTTTTCAGTATGGAAGAATCTTAGTATTGTCAACTTATCCAACAATTCTTTTAATGGGAGCATCCCATTTTCACTTTCAAATTTGACTCATCTCTCTTCTTTAGTTCTAGCCAACAACACCCTTTCGGGTGACATTCCTGATCTCACTATCCCTACCCTGCTGGAGCTGAATTTTGCCAACAATAACCTTACCGGGGTTGTGCCCGAATCGTTGGAGAGATTTCCAAGGGGCGCATTTTCTGGTAACAATCTTGCTTCTTCACATGCTCTTTCTCCTTCTTTTCTTATTAAACCCCCAAATTCTCATCCAACAAGGAAAAAATCCAAAGGACTTCCAGAACCAGCATTGTTGGGTGTCATTATTGGTGCTTGCGTGCTGGGAATTTCAGTGATAACAGCTTTTGTGATTGTGTGTTGCTATGAGAAAGGTGGTAGAAGTGGACAACAAGTGAAGTCTCAGAAAGGAGAAGCATCCAGGAAAAAGGAAGGTTCTGAAAGTCGAGACAAGAACAGAATTGTTTTCTTTGAGGGTTGCACTCTTGCATTTGACTTGGAGGACTTGTTGAGAGCATCTGCTGAAGTGCTTGGAAAGGGCACGTTTGGGACAGTGTATAAGGCTGCTCTAGAAGACGTAACAACCGTGGCAGTGAAAAGGTTGAAGGATGTCATTGTCGGAAAACGTGAGTTTGAACAACAGATGGAGATGGTCGGGAGGATTAGGCACGATAATGTGGCGGCTTTAAGGGCATATTACTATTCAAAGGAGGAGAAACTTATGGTATATGATTACTACGAACAGGGCAGTGTGTCTTCAATGTTGCATGGCAAAAGGGAAGGAAGTAGAGTTTCTTTAAACTGGGATAGCCGTTTGAAAATAGCAATTGGTGTAGCAAGAGGCATTGCTCACATCCATGCTCAACAAGGAGGAAAACTCCTCCATGGAAACATAAAGTCCTCCAACATCTTCCTCAACCCACGAGGATATGGTTGTCTATCTGACATTGGTCTTGCAACACTGATAAATCCAGCAACGAGAACAACAGGATACCGTGCCCCAGAAGCCACGGACACCCGAAAATCGGTAGCCGCATCTGATGTCTATAGTTTTGGGGTGCTGCTACTTGAGCTTCTAACTGGGAGGTTTCCCTTACATGCCAAAGGAGGTGAGGAAGTTGTCCACTTGGTTAGATGGGTGAATTCAGTGGTTAGAGAAGAGTGGACTGCAGAAGTGTTTGATGTGGAGTTGCTGAGGTATCCAAATATTGAGGAGGAAATGGTTGAGATGCTGCAAATAGGGATGGCATGTGTTGTGAGAACAGCAGATCAGAGGCCAAAAATTGGTGATGTGGTGAGAATGGTGGAGGAAATTCGTAGGGTAAATGCCGAAAATAGATCATCCACTGAATCAAGGTCAGAAGGTTCCACTCCAACCCCTCATTCCATTGAGATACCTTCAACCTCTTTTGCATATTGA 1872 0.4407 MANMLCVLLMIGAMMFGVRAEPTEDKQALLDFLHNISHSHHLINWDKSSSVCKSWIGVTCNSEESHVIALQLTRTGLSGPIPPNTLSRLSALQTVSLASNSITGSFPSDFSQLKNLIYLYLQFNKFSGPLPSDFSVWKNLSIVNLSNNSFNGSIPFSLSNLTHLSSLVLANNTLSGDIPDLTIPTLLELNFANNNLTGVVPESLERFPRGAFSGNNLASSHALSPSFLIKPPNSHPTRKKSKGLPEPALLGVIIGACVLGISVITAFVIVCCYEKGGRSGQQVKSQKGEASRKKEGSESRDKNRIVFFEGCTLAFDLEDLLRASAEVLGKGTFGTVYKAALEDVTTVAVKRLKDVIVGKREFEQQMEMVGRIRHDNVAALRAYYYSKEEKLMVYDYYEQGSVSSMLHGKREGSRVSLNWDSRLKIAIGVARGIAHIHAQQGGKLLHGNIKSSNIFLNPRGYGCLSDIGLATLINPATRTTGYRAPEATDTRKSVAASDVYSFGVLLLELLTGRFPLHAKGGEEVVHLVRWVNSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIGMACVVRTADQRPKIGDVVRMVEEIRRVNAENRSSTESRSEGSTPTPHSIEIPSTSFAY 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02173 623 Pfam Leucine rich repeat N-terminal domain 23 61 IPR013210 -
Vimu1g02173 623 Pfam Protein kinase domain 325 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02173 623 SUPERFAMILY Protein kinase-like (PK-like) 326 587 IPR011009 -
Vimu1g02173 623 PANTHER OS05G0588300 PROTEIN 5 599 - -
Vimu1g02173 623 SUPERFAMILY L domain-like 28 206 - -
Vimu1g02173 623 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 397 601 - -
Vimu1g02173 623 Gene3D Phosphorylase Kinase; domain 1 286 396 - -
Vimu1g02173 623 Gene3D Transferase(Phosphotransferase) domain 1 397 609 - -
Vimu1g02173 623 ProSitePatterns Protein kinases ATP-binding region signature. 328 359 IPR017441 GO:0005524
Vimu1g02173 623 Pfam Leucine rich repeat 81 126 IPR001611 GO:0005515
Vimu1g02173 623 MobiDBLite consensus disorder prediction 599 623 - -
Vimu1g02173 623 FunFam pollen receptor-like kinase 1 290 396 - -
Vimu1g02173 623 Gene3D Ribonuclease Inhibitor 22 233 IPR032675 -
Vimu1g02173 623 ProSiteProfiles Protein kinase domain profile. 322 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02173 623 MobiDBLite consensus disorder prediction 594 623 - -
Vimu1g02173 623 FunFam Probable inactive receptor kinase RLK902 22 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02173 Vimu-Chr1 31060298 31062487 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02173 14 614 Receptor kinase-like Gene Family AT4G23740 55.698 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu1g02173 Pkinase 9.9e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02173 - - gmx:100810095 1046.19