Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02168 ATGGAATCACCCAACTCATCTCCCATTTTCCCACAATTCACCCTAGACACCACCAAAAACAATAACCCTGATCACTTCATTGTCGAGGACCTTTTGGATTTCTCCAACGACGATGCTGTAAACGCTGACACCATATTCGATTCTCTCCCTGTCAACTCCACCGACTCTTCCAACGTCACCGCCGTTGATAGCTGCAACTCCTCCTCCTTTTCCGGCTACGACCCCAATACCTTTCCGGACATTGGTAGCCGGAATCTCTCCGAAGGTCATTTTTCCGGTGACCTATGCGTTCCGTACGATGATATAGCAGAGCTAGAATGGCTTTCGAATTTCGTGGAGGAGTCTTTTTCCAGCGAGGACCTGCAGAAGATGCAGCTGATATCAGGCATGAATGCGAGAAACGACCACGTACCAAAGGCCCGGGGGTTCCACTCCGAGCCCACAAGAAATGGGTTTCATTCCGAGCCCACAAGAAACGGGTTTCATTCCGAGCCCACCCGAAACAATCCGATATTCAATTCGGAAGTGTCGGTCCCAGCCAAGGCCCGTAGCAAAAGGTCCCGCGGGCCCCCATGCAACTGGGCATCGCGTCTCCTCGTCCTGTCCCCGACGACGTCGTGTTCAGACACTGAGGTCGTTGCTCCTGTTTCCACTCATTCCGGCACAAAAAAGCCCGCGAAGACAACACCAAGAAAGAAAGACAGCGGCGACGGCAGTGGTGGAGACGGACGCAGGTGTCTGCATTGCGCCACGGACAAGACACCACAGTGGCGAACCGGGCCCATGGGCCCAAAGACGCTGTGTAACGCGTGTGGAGTGAGGTACAAGTCGGGGCGGCTCGTGCCCGAGTACAGACCCGCGGCAAGCCCAACGTTTGTTCTGACAAAACACTCGAACTCGCACCGCAAGGTGCTGGAGCTGCGGAGGCAGAAGGAGATGGTGCGGGCCCAACAGCACCAGCAACAACAGTTCCTTCAACACCATCATCATCAGAACATGCTGTTAGACGTATCCAACAGTGAAGATTACTTGGTCCACCAACACATGGGACCCGATTACAGGCAGCTTATCTAG 1074 0.5419 MESPNSSPIFPQFTLDTTKNNNPDHFIVEDLLDFSNDDAVNADTIFDSLPVNSTDSSNVTAVDSCNSSSFSGYDPNTFPDIGSRNLSEGHFSGDLCVPYDDIAELEWLSNFVEESFSSEDLQKMQLISGMNARNDHVPKARGFHSEPTRNGFHSEPTRNGFHSEPTRNNPIFNSEVSVPAKARSKRSRGPPCNWASRLLVLSPTTSCSDTEVVAPVSTHSGTKKPAKTTPRKKDSGDGSGGDGRRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRAQQHQQQQFLQHHHHQNMLLDVSNSEDYLVHQHMGPDYRQLI 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02168 357 Gene3D - 242 330 IPR013088 GO:0006355|GO:0008270
Vimu1g02168 357 ProSiteProfiles GATA-type zinc finger domain profile. 240 276 IPR000679 GO:0006355|GO:0043565
Vimu1g02168 357 FunFam GATA transcription factor 236 323 - -
Vimu1g02168 357 MobiDBLite consensus disorder prediction 140 190 - -
Vimu1g02168 357 MobiDBLite consensus disorder prediction 211 246 - -
Vimu1g02168 357 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 241 304 - -
Vimu1g02168 357 PANTHER GATA TRANSCRIPTION FACTOR 18 321 - -
Vimu1g02168 357 ProSitePatterns GATA-type zinc finger domain. 246 271 IPR000679 GO:0006355|GO:0043565
Vimu1g02168 357 Pfam GATA zinc finger 246 279 IPR000679 GO:0006355|GO:0043565
Vimu1g02168 357 CDD ZnF_GATA 245 292 IPR000679 GO:0006355|GO:0043565
Vimu1g02168 357 MobiDBLite consensus disorder prediction 150 175 - -
Vimu1g02168 357 PIRSF Txn_fac_GATA_plant 10 337 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vimu1g02168 357 SMART GATA_3 240 290 IPR000679 GO:0006355|GO:0043565
Vimu1g02168 357 MobiDBLite consensus disorder prediction 227 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02168 Vimu-Chr1 30997787 30999379 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02168 22 357 C2C2-Gata Transcription Factor Family AT4G32890 47.989 9.99e-93 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vimu1g02168 GATA 3.3e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02168 - - gmx:100800146 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02168 1 30997787 30999379 Vimu1g02168 1 30997787 30999379 ECH