Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02164 ATGAGTGGAAGTGGCAAAAAGCGCTCTTCAAAGTGGGATTTGAGAGTTGATCCTGAATTTTCACCTGATGCTAGTAAGCAATTACGGCCTGGGTGGTCCTCTACAGATGTTGCTGGTAGCAATAGTTCGAAGTGGTCGTATTTGGAAGGAAGTGATCAATTAAAGCCTGATATTGGATTTTCATCCAAGGAACCTTTTTCTGGAGGCCGAGGTTCACATAAGGACGATGTTATGAATAAAGACTATGGATGTTTGGATGCAACAATGGAATGGGATGAGGATGGTTACAACAAGAAAGTTTCTCCTGAATCTGAGGAATGGAAACCTAAGAGACATAGTCAATCTCCTAAAAATGGTTGGAGCAGGTCAGTCAGGAGTCGAAGCAGGAGCCCTCCTCATGGTTTTAGGTGGGATTCAGGAGTCAGTGACAGAAATAGAATGCGGGCTGGAGGATCGGCACAACCATGTAGAGACTTTGCTGCTGGTAAATGCAGAAGAGGTAGCCATTGCCACTTTCTTCATGATAGTCAAAATCATGAGGATAGTTGGGAAAATAAGGGCAGGAAAGATGGAGCTCCTAGATATTCTGTTCCCCAAGACGGTAGAGACTATTCTCTCAAGAGTGGCAGATCTAATGAAGCTTGTACTAATTTTGCAAAGGGAAGGTGTAGAATGGGAGCATCATGCAAGTTTGTGCATGGCAATTCTGATGGACATGGTAAAGTTTCTGTGGATGAATTAAATAGAGAGAGGGATATTGATAGAAGGCACAGAGATAGTTCTTTTGAGCAGGGAGGCGGACATGGACCAAACCGAAGTAATGATACTCTTTGCAAATTTTTTGCTAATGGAAATTGTCGAAATGGTAAATATTGTAGGTTTTCTCATGATAGGCAAGCATGTAGGAGCCCTAATAGAAGATTAAGAGATGATAGGTGGGCAAGCAATCCTGGGGTAGATCATCATAGGATGGATAGACCGAAATTGAGTGATTCAGATAGTCCTAATAGAAGGCCCAGGGATGATAGGTGGGGTTCAGATGGTAACAAGGCTGATGACGATGAAGTTTGGGACAGTCCAAAGTGGAATGATACAGTTGCTGTATCTGATTCAGGAAAGCTGGTTGAGGGCAAAAGTGAAAATGTTGGTGCCACAGAGCCAGGATTCACTTCGTTACCTACAAGGTATGGATGGAGTCATAGTTTGGATAAGAGCAGAGTGCATGATGAGCAGCCTTTTTCAAGTGATAAGAAGGAAGTTAACAGTTGGGTATCAGGAAGTACTGCTACCAACATTGTTTCCCAGTCAATAGGTACAGACATTTGGTTGGGTGATACCAAAATGTCTCCTGATTGGCATTACAGGGTGGGATCTTCCAACACCATTGAAGAAAAGCATGAACAAAATAAGCGTGGCGTAAAACAAGGTGGTACGTATTTAGCCACCTCTGAACGTGACAGAATACAAATTGCTGCAGCACAAGGCACTAATCAGAATGCAGAGAGTTTGAATCCTTTGCATTCTTCTGGCTTCCAAGCAGTTGGACAAAGGCAGGCCCCAGTTCCGATTCTACCTTCAAAGAGAGGAATTGTTGATGGTATGCCAAACCAGGAAGTCTCCACTGAGAAAAAATACACTGCTGAACCAAATATTATGGATTCTGGCTTATCACAAGTTAGTTCAAGAAATCCTCCTCCCACTGAGAATCTGGTAGGCCAAGAACAGCTTGCTCAGCTTACCAATCTCTCAGCCTCTCTGGCCCATATCCTTGGGACAGGGCAACAGCTACCACAACTTTATGCTGCTTTAAATTCTCACTATGCCAAGGACACATCCTCCCTAGCAAAAGCTGAGGTGTCTGTTGTGCCTGTTTCCAATTCATTCATCCGCTCTGATCCTGCTGTGCCTGTTTCCAATACGTTCATCCACCCTGATCCTGCTGTTGGACTCCTGAAGCAGTATGATCCAATGTGTGATAGTGTTGAGCTAAAGAGTGCTGCTGCAAGTGGGTTACCCCCATCCATTCCTTCAAGTAAAAGAGTTGCAGAAGATGTTCTGGAAATTCCATCACAGTTGTCCAACACATCAAAACAAAACCATGGTGATTCTTCCAAGGCTGCTGGCCCAGAAGAATTAGTCAAGAGTGATCCTCTAGTGCAGTTGCAATCAGGTCAAAACACTGAAGGTAAGGATGATAACAAGGAAGTGTTACCTGAGGAAAGACACAAATCTCGAGATGATCCTAAAAGTATCAAAGAGAATGGTCCTTTGGAAAACATGGAGCAAACTGGAGGTCCTGATGATGCCAAGAAAACAAAGGATTTGAAGGGGATTCGTGCATTTAAATTTGCACTGGTTGAGTTTGTTAAGGAGCTTCTGAAACCAACATGGAAAGAAGGTCAAATCACCAAAGATGATTATAAAACAATCGTGAAGAAAGTTGTTGATAAAGTAACTGGTTCCATGCAGGGGGCCAATATTCCTCAGACACAAGAGAAAATTGACAACTATTTGTCATTTTCAAAACCAAAGCTTAATAAACTTGTACAGGTTAGTGTTGGTTGGCTTACACATTCCCGTTATGTTTTGAAGGATTCCAGTCCTTTCGCCCATTTTTCTTCGGTTGATGAAAGCAAATATTGA 2643 0.4283 MSGSGKKRSSKWDLRVDPEFSPDASKQLRPGWSSTDVAGSNSSKWSYLEGSDQLKPDIGFSSKEPFSGGRGSHKDDVMNKDYGCLDATMEWDEDGYNKKVSPESEEWKPKRHSQSPKNGWSRSVRSRSRSPPHGFRWDSGVSDRNRMRAGGSAQPCRDFAAGKCRRGSHCHFLHDSQNHEDSWENKGRKDGAPRYSVPQDGRDYSLKSGRSNEACTNFAKGRCRMGASCKFVHGNSDGHGKVSVDELNRERDIDRRHRDSSFEQGGGHGPNRSNDTLCKFFANGNCRNGKYCRFSHDRQACRSPNRRLRDDRWASNPGVDHHRMDRPKLSDSDSPNRRPRDDRWGSDGNKADDDEVWDSPKWNDTVAVSDSGKLVEGKSENVGATEPGFTSLPTRYGWSHSLDKSRVHDEQPFSSDKKEVNSWVSGSTATNIVSQSIGTDIWLGDTKMSPDWHYRVGSSNTIEEKHEQNKRGVKQGGTYLATSERDRIQIAAAQGTNQNAESLNPLHSSGFQAVGQRQAPVPILPSKRGIVDGMPNQEVSTEKKYTAEPNIMDSGLSQVSSRNPPPTENLVGQEQLAQLTNLSASLAHILGTGQQLPQLYAALNSHYAKDTSSLAKAEVSVVPVSNSFIRSDPAVPVSNTFIHPDPAVGLLKQYDPMCDSVELKSAAASGLPPSIPSSKRVAEDVLEIPSQLSNTSKQNHGDSSKAAGPEELVKSDPLVQLQSGQNTEGKDDNKEVLPEERHKSRDDPKSIKENGPLENMEQTGGPDDAKKTKDLKGIRAFKFALVEFVKELLKPTWKEGQITKDDYKTIVKKVVDKVTGSMQGANIPQTQEKIDNYLSFSKPKLNKLVQVSVGWLTHSRYVLKDSSPFAHFSSVDESKY 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02164 880 MobiDBLite consensus disorder prediction 177 205 - -
Vimu1g02164 880 SMART c3hfinal6 150 176 IPR000571 GO:0046872
Vimu1g02164 880 SMART c3hfinal6 210 235 IPR000571 GO:0046872
Vimu1g02164 880 SMART c3hfinal6 272 298 IPR000571 GO:0046872
Vimu1g02164 880 MobiDBLite consensus disorder prediction 1 79 - -
Vimu1g02164 880 Pfam CCCH-type zinc finger 277 297 IPR041367 -
Vimu1g02164 880 ProSiteProfiles Zinc finger C3H1-type profile. 150 177 IPR000571 GO:0046872
Vimu1g02164 880 MobiDBLite consensus disorder prediction 690 709 - -
Vimu1g02164 880 MobiDBLite consensus disorder prediction 177 196 - -
Vimu1g02164 880 Gene3D - 267 327 - -
Vimu1g02164 880 ProSiteProfiles Zinc finger C3H1-type profile. 272 299 IPR000571 GO:0046872
Vimu1g02164 880 MobiDBLite consensus disorder prediction 303 360 - -
Vimu1g02164 880 MobiDBLite consensus disorder prediction 93 113 - -
Vimu1g02164 880 MobiDBLite consensus disorder prediction 719 772 - -
Vimu1g02164 880 MobiDBLite consensus disorder prediction 240 274 - -
Vimu1g02164 880 Gene3D - 146 250 - -
Vimu1g02164 880 MobiDBLite consensus disorder prediction 8 22 - -
Vimu1g02164 880 MobiDBLite consensus disorder prediction 728 754 - -
Vimu1g02164 880 MobiDBLite consensus disorder prediction 114 128 - -
Vimu1g02164 880 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 155 175 IPR000571 GO:0046872
Vimu1g02164 880 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 213 234 IPR000571 GO:0046872
Vimu1g02164 880 SUPERFAMILY CCCH zinc finger 274 297 IPR036855 GO:0046872
Vimu1g02164 880 ProSiteProfiles Zinc finger C3H1-type profile. 209 236 IPR000571 GO:0046872
Vimu1g02164 880 MobiDBLite consensus disorder prediction 240 263 - -
Vimu1g02164 880 MobiDBLite consensus disorder prediction 303 395 - -
Vimu1g02164 880 MobiDBLite consensus disorder prediction 27 49 - -
Vimu1g02164 880 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 853 - -
Vimu1g02164 880 MobiDBLite consensus disorder prediction 93 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02164 Vimu-Chr1 30940484 30944158 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu1g02164 zf-CCCH 0.00022 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02164 - K22909 gmx:100783856 1317.75