Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02159 ATGCGAAGGTATGAGGAGAATAATTTAAAGGTCGGTAGAAAGAAAACGAATGTGATGTTCATAGGGGATGGGAAGGGCAAAACTGTCATTACAGGAAAAAAGAATGTGATAGATGGCATGACCACATTCCACACTGCATCCTTTGGTATTCCTCTTTCATCGCTGCTTGTTGATTATTTTAATGCTTGTTGTTTCCAACTATACAAATTTTTCTTATCTTTTTGCACTGTGAGAAAAGTATGGGTAGAAAAATTAGAACCATTAACATTCATGATTATTGAACACTACAAACTTGCACGTGGCCCATGTCGTCCTACTTGTTAA 324 0.3673 MRRYEENNLKVGRKKTNVMFIGDGKGKTVITGKKNVIDGMTTFHTASFGIPLSSLLVDYFNACCFQLYKFFLSFCTVRKVWVEKLEPLTFMIIEHYKLARGPCRPTC 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02159 107 Gene3D - 2 70 IPR012334 -
Vimu1g02159 107 PANTHER PECTINESTERASE 3 50 - -
Vimu1g02159 107 Pfam Pectinesterase 4 50 IPR000070 GO:0030599|GO:0042545
Vimu1g02159 107 SUPERFAMILY Pectin lyase-like 8 50 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02159 Vimu-Chr1 30877851 30878383 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02159 3 57 Carbohydrate Esterase AT5G53370 69.091 5.22e-21 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02159 - - gmx:106796002 95.5153