Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02158 ATGGCAGCTGCTAGTGGTGCTGGATTCATGGCACGAGATATCACGTTCGAGAACTATGCCGGACCGGTGAAGCACCAAGCGGTGGCGCTCCGCGTTGGAGCCGATCACGCGGTGGTCTACCGGTGCAACATTATGGGGTACCAAGACTCACTCTACGTCCACTCTAATCGACAATTTTTTCGTGAATGTGACATTTACGGTACCGTAGACTTCATATTCGGCAATGCTGCGGTCGTCTTCCAAAAATGTAATATTTATGCCCGTAAGCCCATGGCCCAACAGAAGAACACCATTACAGCCCAAAATAGAAAAGACCCAAATCAGAATACGGGCATATCCATGCACAATTGTCGGATCCAACCTGCTTCGGATCTTGTACCGGTTAAGGGCAGCTTTCCCACCTATTTGGGCCGTCCATGGAAGCAGTTCTCTAGAACTGTGTTCATGTTATCCTACATGGGTGACCACATACATCCTAGTGGATGGTTGGAATGGAATGGAGACTTCGCTTTGGACACATTGTATTATGGTGAGTACATGAATTATGGTCCGGGTGCAGCTGTGGGCCAACGGGTCAAATGGCCAGGTTACCGGGTCATTACTTCTTCTGTGGAGGCAAATAGGTTCACGGTGGCCCAGTTTATATCCGGGTCAGCCTGGTTACCATCCACTGGAGTGGCTTTTGCGGCCGGGTTATCCGCATGA 705 0.5007 MAAASGAGFMARDITFENYAGPVKHQAVALRVGADHAVVYRCNIMGYQDSLYVHSNRQFFRECDIYGTVDFIFGNAAVVFQKCNIYARKPMAQQKNTITAQNRKDPNQNTGISMHNCRIQPASDLVPVKGSFPTYLGRPWKQFSRTVFMLSYMGDHIHPSGWLEWNGDFALDTLYYGEYMNYGPGAAVGQRVKWPGYRVITSSVEANRFTVAQFISGSAWLPSTGVAFAAGLSA 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02158 234 Gene3D - 1 232 IPR012334 -
Vimu1g02158 234 FunFam Pectinesterase 4 1 232 - -
Vimu1g02158 234 PANTHER PECTINESTERASE 3 222 - -
Vimu1g02158 234 ProSitePatterns Pectinesterase signature 2. 65 74 IPR033131 -
Vimu1g02158 234 SUPERFAMILY Pectin lyase-like 4 231 IPR011050 -
Vimu1g02158 234 Pfam Pectinesterase 3 217 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02158 Vimu-Chr1 30875818 30876522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02158 3 233 Carbohydrate Esterase AT5G53370 79.221 6.63e-141 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02158 - - gmx:106796002 454.521