Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02144 ATGAGTCGTATAACCGTCGGATCAAATAGTGAACTATCCAAATTACCATATCCAGCAATTCTCATTTGGGTTCTCTCTCCCAATTTACACTCCAGACACCCTCAACCTCGCCAAGGGAGAGAGAAGAGAAAAGAACCTGTTCTTCCACAGAAAGGTGTTTGGTTTTGTCGGAGTCCACCCTTTGGATCGATCCATGACCACCATCCCCATCTTCCTTCTCCTCTTCTCCTTTTACTCCTCTTCTTTTTCCTGAGCAAAATTTTCCGGGATATGGGTTTTGGTGAATCAATGGAGATGGACAGCATTGACTGTGTATCATTTTCTGATGGCATGGATGAGGATGAGATCCAACACCACACTCTGCATCCTCATAACCACTCTGAGTTTTCCTCTAACAAGCCTCGTAATGGCGGTGCCAATAGCAATAATGTTATGGGAGCCACCGCCATTTCTCCTGCAACCAGCGTTCATGAGTTGCTTGAATGCCCTGTTTGCACAAATTCAATGTACCCCCCTATTCACCAGGTCAGCTCTTGTACTCATTTTCATCTTATTTGTGTTTTTATTGGAATTGAGTTTATTCTGAGCATTGCTTTGGCTTTTTCTCGGGGTTTGGGGAAGTTTTGGATTTGGTTTTGGAGATTTAGACAAGAGCTTGGGGATATTAGGTGTCTAGCACTGGAGAAGGTGGCTGAATCACTTGAGTTACCTTGCAAGTACTATTCCCTTGGATGTCCCGAAATCTTTCCATATTACAGCAAGCTTAAGCATGAGACTGTATGCAATTTTAGACCATACAATTGTCCTTATGCTGGATCAGAGTGCTCTGTTGTTGGAGACATTCCCTTCCTTGTTGCACATTTGAGGGATGATCATAAGGTGGACATGCACACAGGTTGCACATTCAACCATCGCTATGTGAAATCCAATCCTCGTGAAGTAGAGAATGCAACTTGGATGCTAACCGTATTTCATTGTTTTGGGCAATACTTCTGCCTACACTTCGAAGCTTTCCAGCTTGGCATGGCTCCTGTTTACATGGCATTCCTTCGATTTATGGGTGATGAGAACGAGGCTCGTAACTACAGCTACAGCCTTGAGGTTGGGGCCAATGGCAGGAAACTCATTTGGGAGGGCACACCACGAAGTATTCGCGATAGCCACAGGAAAGTCAGGGATAGCCACGATGGTCTCATTATTCAACGAAACATGGCCTTATTTTTTTCTGGAGGTGATAAGAAAGAGCTAAAATTAAGAGTTACAGGAAGAATATGGAAGGAACAACAGAATCCAGATGCTGGGGTGTGCATACCAAATCTTTGCAACTAA 1329 0.4394 MSRITVGSNSELSKLPYPAILIWVLSPNLHSRHPQPRQGREKRKEPVLPQKGVWFCRSPPFGSIHDHHPHLPSPLLLLLLFFFLSKIFRDMGFGESMEMDSIDCVSFSDGMDEDEIQHHTLHPHNHSEFSSNKPRNGGANSNNVMGATAISPATSVHELLECPVCTNSMYPPIHQVSSCTHFHLICVFIGIEFILSIALAFSRGLGKFWIWFWRFRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYNCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDKKELKLRVTGRIWKEQQNPDAGVCIPNLCN 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02144 442 Pfam Seven in absentia protein family 222 421 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vimu1g02144 442 CDD Sina 294 422 - -
Vimu1g02144 442 FunFam E3 ubiquitin-protein ligase SINAT3 230 288 - -
Vimu1g02144 442 MobiDBLite consensus disorder prediction 122 142 - -
Vimu1g02144 442 ProSiteProfiles Zinc finger SIAH-type profile. 233 293 IPR013010 GO:0008270
Vimu1g02144 442 FunFam E3 ubiquitin-protein ligase SINAT5-like 289 421 - -
Vimu1g02144 442 SUPERFAMILY TRAF domain-like 233 425 - -
Vimu1g02144 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 228 287 IPR013083 -
Vimu1g02144 442 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 288 421 IPR008974 GO:0005515
Vimu1g02144 442 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 140 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02144 Vimu-Chr1 30663498 30670815 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02144 130 428 C3H Transcription Factor Family AT2G41980 67.224 3.16e-142 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02144 K04506 - qsa:O6P43_015002 594.734