Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02135 ATGGAACCCCAGAAAACTCCATTAATAGATGACAGCTTATTAGATATTTTCATAGATACGGAGTTTGGTGGAGGAGACCTCCTTTCCATCTTGGAGAGCCTACAGGACTCGAAAGATTTTGCCCCCATCAACGAAACTTCGAAAGAAAACGAGCTAATGGAGTCCCGAAAGGTCTCAATATCTTCGAGTCTTCCACAAGATTTTGAAACTGAGCTTGAAATCTCACCCGAAAGGAAGACAAACAAGCTTAGCCCCACCTTGCCAGAGGAACCACAGAAGGTGTCTCATATAACAGTCGAGCGCAACCGAAGAAAGCAAATGAATTACAACTTGTCCGTATTGAGATCGCTTTTGCCTTCCTTCTATGCCAAACGGGGAGACCAAGCATCAATAATTGAAGGTGTGGTTGATTACATCAATGAGTTGCAACAGCTGCTACAGTGCCTAGAGGCCAAGAAACAAAGAAAAGTTTACAGTGATGTACTAAGCCCTAGGCTAGTTTCAAGCACAAGGCCTTCACCACTAAGCCCTAGAATAAACCTACCCATTAGTCCAAGGACTCCACAGCCTGGCAGTTACCTTTCTCCAACTATACCCAACTCTCCTACTTCTTCGGCTTCTTCTTCAATCAACGATAATATCAAAGACCTTGTTGCCAATTCCAAGTCTGTTATCGCCGATGTTCAGGTCAAGTTTTCAGGTCCACATCTTCTTCTCAAGACAGTTTCACCACCAATTCCTGGACAGGCTCTCAGAATAATATCAGCACTTGAAGACCTAGCACTTGAAATCCTCCATGTCAACATCAACATTGCTGATGAAACCATGCTCAACTCCTTCACTATTAAGGTAATTGTCATGCTGTCAAACCACTGTTTTATTGATATCTTAAGTTAA 897 0.4281 MEPQKTPLIDDSLLDIFIDTEFGGGDLLSILESLQDSKDFAPINETSKENELMESRKVSISSSLPQDFETELEISPERKTNKLSPTLPEEPQKVSHITVERNRRKQMNYNLSVLRSLLPSFYAKRGDQASIIEGVVDYINELQQLLQCLEAKKQRKVYSDVLSPRLVSSTRPSPLSPRINLPISPRTPQPGSYLSPTIPNSPTSSASSSINDNIKDLVANSKSVIADVQVKFSGPHLLLKTVSPPIPGQALRIISALEDLALEILHVNINIADETMLNSFTIKVIVMLSNHCFIDILS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02135 298 Gene3D - 87 156 IPR036638 GO:0046983
Vimu1g02135 298 SMART finulus 97 148 IPR011598 GO:0046983
Vimu1g02135 298 MobiDBLite consensus disorder prediction 168 209 - -
Vimu1g02135 298 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 91 142 IPR011598 GO:0046983
Vimu1g02135 298 PANTHER TRANSCRIPTION FACTOR FAMA 25 286 IPR044283 GO:0003700|GO:0010052
Vimu1g02135 298 MobiDBLite consensus disorder prediction 185 209 - -
Vimu1g02135 298 Pfam Helix-loop-helix DNA-binding domain 92 143 IPR011598 GO:0046983
Vimu1g02135 298 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 159 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02135 Vimu-Chr1 30554660 30556325 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02135 17 284 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 45.562 3.90e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu1g02135 HLH 5.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02135 K20558 - gmx:100809717 390.963