Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02130 ATGGTTCAGAAAAGACCGTATTATTGCCTTGTTATGCTCTTTGTGTTGGGGATTTGTTTTGAGCCATCGTTGGGAGACACAAATGCTCAAATTTTGATGAGGTTCAAAGGTTCCTTGTCAAATGGGAAAGCCTTAAATAACTGGGGGAGCGAGTCTAGTTTATGTAGCTGGACTGGCTTGTTATGCGGCAAAAACCAAACATTTTATGGCTTGAGACTAGAGCATATGGAACTGGGTGGGAAGATTGATGTAGAAACCTTGGTTGAATTGCCAACTTTGGTAAGCTTTAGTGTTATTAACAATACATTTGAGGGTCCCATGCCGGAGTTCAAAAAACTTGTGAGTTTAAGGGCATTGTTTCTGTCCAATAACAAGTTTTCCGGTGATATTCCGGATGATGCTTTTGAAGGCATGAGAAAACTGAAGAGGGTATTCTTGGAAGAAAATGACTTCACTGGTCCTGTTCCAAAGTCACTTGCTAACTTGCCAAGACTCTTGGATTTGGACTTACGCGGGAATGGTTTTGGAGGAAACATACCAGATTTTCAACAGCAGGATTTTAGAGTATTTAATTTGTCAAATAACCAATTGGAGGGTCAAATACCAGAAAGCTTAAGCAACAAGTATCCAAGTTCATTTGCTGGCAACGCAGGTCTGTGTGGAAAACCTTTAAGTTCCTGCAAGATTGGCGGCAACGAATCTAGATCATTGGAACCAAACCTTGATTCTCCGGACAGCAAGGGAAAAAACCACAGAACCCTTATAACTGCCATTATAGTAGTAGCAGTTGTTGCTTTTTCTTCAACAGTTGCACTTCTATTTATCCACAAACACAGGAGAAAAAGGTTTAAACCCAGAACATTACCCACGCAGGGTAATTCCCAGCAAAGTGTAGGCTTCAAGGAGTCACACTCCATTGATATGACAGTTGATTTGAAAGGTGGAGATAGCGAATTGAACTTTGTTAGGGAAGACAGAGGAGGATTTGATTTGCATGAACTGCTTAGTGCCTCAGCATCCGTTCTTGGTAGTGGAAGTTTCGGGTCCACTTACAAGGCTATGATTCTGAATGGACCAACAGTGGTTGTGAAGAGGTTTAAGCACATGAACAATGTTGGAAAACAGGAGTTTAGTGAACACATGCAAAAGCTTGGAACTTTAACACACCCTAATCTTCTCCCTCTTGCAGCATTCTACTACAGAAAAGAAGATAAGTTTTTGGTTTATGACTTCGCCGAAAATGGCAGCTTGGCCAGTCATCTACACGGAAAAAATGGCTCTGTTCTTACATGGTCCACCCGTTTAAAAATCATAAAAGGGGTGGCTAGGGGCTTAGCCTACCTGTATGAAAACTTTCCAGGAAAAATGGTACCTCATGGTCATCTGAAATCCTCTAATGTGGTGCTGGATCATTCATTTGAGCCAAAGTTGACTGAGTATGGCCTTGTGGAAGTGATGAATAAGAGCCATGCTCAGAAGTTCATGGCAGGCTACAAGGCCCCAGAGACGAGCAAATTTGGTAGGCCAAATGTGAAAAGTGATGTGTGGTGTCTGGGGATCCTGATTCTGGAGGTGCTGACAGGGAAGTTCCCAGCAAATTATCTGAGACATGGGAAGGGTGGGAATAATTCTGACTTGGCAACATGGGTGGATTCAGTTGTGAGGGAAGAATGGACTGGTGAGGTTTTTGATAAGGACATCTTGGGGACTAGGAATGGGGAGAGTGAGATGCTGAAGCTGCTGAGGATTGGAATGTTTTGTTGCAAATGGAATGTAGAGAATAGGTGGGATTGGAATGAGGCAGTGGCAAAGATTCAGGAGGTGAAGGAGAATGATGGTGAGGATGATTATTCTTCTTGTTATTATGTCAGTGAAGACGATTTTAATTCAAGGACTGTCACTGAAGATGATTTCTCTTTCTCTGTCACTAATGGATGA 1938 0.4231 MVQKRPYYCLVMLFVLGICFEPSLGDTNAQILMRFKGSLSNGKALNNWGSESSLCSWTGLLCGKNQTFYGLRLEHMELGGKIDVETLVELPTLVSFSVINNTFEGPMPEFKKLVSLRALFLSNNKFSGDIPDDAFEGMRKLKRVFLEENDFTGPVPKSLANLPRLLDLDLRGNGFGGNIPDFQQQDFRVFNLSNNQLEGQIPESLSNKYPSSFAGNAGLCGKPLSSCKIGGNESRSLEPNLDSPDSKGKNHRTLITAIIVVAVVAFSSTVALLFIHKHRRKRFKPRTLPTQGNSQQSVGFKESHSIDMTVDLKGGDSELNFVREDRGGFDLHELLSASASVLGSGSFGSTYKAMILNGPTVVVKRFKHMNNVGKQEFSEHMQKLGTLTHPNLLPLAAFYYRKEDKFLVYDFAENGSLASHLHGKNGSVLTWSTRLKIIKGVARGLAYLYENFPGKMVPHGHLKSSNVVLDHSFEPKLTEYGLVEVMNKSHAQKFMAGYKAPETSKFGRPNVKSDVWCLGILILEVLTGKFPANYLRHGKGGNNSDLATWVDSVVREEWTGEVFDKDILGTRNGESEMLKLLRIGMFCCKWNVENRWDWNEAVAKIQEVKENDGEDDYSSCYYVSEDDFNSRTVTEDDFSFSVTNG 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02130 645 Gene3D Ribonuclease Inhibitor 136 230 IPR032675 -
Vimu1g02130 645 Pfam Protein kinase domain 340 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02130 645 Gene3D Phosphorylase Kinase; domain 1 313 411 - -
Vimu1g02130 645 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 84 179 - -
Vimu1g02130 645 Gene3D Ribonuclease Inhibitor 26 135 IPR032675 -
Vimu1g02130 645 FunFam Pollen receptor-like kinase 1 412 619 - -
Vimu1g02130 645 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 12 613 IPR046959 -
Vimu1g02130 645 Pfam Leucine rich repeat N-terminal domain 29 62 IPR013210 -
Vimu1g02130 645 SUPERFAMILY L domain-like 48 217 - -
Vimu1g02130 645 SUPERFAMILY Protein kinase-like (PK-like) 340 606 IPR011009 -
Vimu1g02130 645 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Vimu1g02130 645 Pfam Leucine rich repeat 115 174 IPR001611 GO:0005515
Vimu1g02130 645 Gene3D Transferase(Phosphotransferase) domain 1 412 627 - -
Vimu1g02130 645 ProSiteProfiles Protein kinase domain profile. 336 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02130 Vimu-Chr1 30474795 30479905 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02130 6 630 Receptor kinase-like Gene Family AT5G35390 45.636 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu1g02130 Pkinase 1.6e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02130 - - gmx:100781593 996.882