Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02120 ATGGAGGCCAAGTTGGGCGGCGGCGCCGGCGTTATGGCGGCTACTTTCGACGAATTCAAATGGATCTCCTTTATGTTCGATCACGACATAAACGACGATGTCAAACCCTGCAAGCTGGACCCCTTCACCGGAGCTTCTGGTAACCTCAACGACGCTTTCGAAAATCTGGATGCAGTAAGTGGATTTTCAAGTTGTGGTGGAATAACAGATGGTAGGGTCTTGGAGTCCCAAAAGCTGACTCCCGTCGAATCCGCCATCTCTGGAACTATTGATTCTCAGTCTTCCATTTCAGTTTCTGGTAACAAACCAAATGGAAGAGATAACGAAGTGAAAGGGGCGACGACAACAAGTGGTTCCTCACGTGACCCATCTGATGAAGATGATGAAGCAGGTCTCTGTGAACAAAGCACAAACGCTGTTGACACCAAACGTCTTAGAAGGAAGGATTCTAATAGAGAGTCTGCAAGGAGGTCCAGAAGAAGAAAACAAGCCCATTTGGCTGACCTGGAGTGGCAAGTTGAACGACTGAGGCAGGAAAACTCACACCTATTCAAGCAGCTTAGGGATGCAAGCCAACAATTCCGTGATGCGGATACCAATAATCGTGTTCTAAAATCAGACGTCGAAGCTTTAAGAGCTAAGGTAAAGTTAGCTGAGGACATGGTGAGAAGAGGTACAATTCCACCATTCAACAATCAGATTCTTCCAAACCTGAGTGAATTGAGCAATATGAATAATCTGCGTGGCATGGCACATGTCTCACCAACAATTACTGTGCATGGGAATGATGGTGCTTCATATGGTGCTGGAATCACACTCAGTGGACATAACTCACCTCTTGAGCTTGGAAACTTGGACATATCTTGCACTGATTTCAATGGTGATAATGCTGTGAGCTCTATCACTACCATGTGGCCTTAA 921 0.4604 MEAKLGGGAGVMAATFDEFKWISFMFDHDINDDVKPCKLDPFTGASGNLNDAFENLDAVSGFSSCGGITDGRVLESQKLTPVESAISGTIDSQSSISVSGNKPNGRDNEVKGATTTSGSSRDPSDEDDEAGLCEQSTNAVDTKRLRRKDSNRESARRSRRRKQAHLADLEWQVERLRQENSHLFKQLRDASQQFRDADTNNRVLKSDVEALRAKVKLAEDMVRRGTIPPFNNQILPNLSELSNMNNLRGMAHVSPTITVHGNDGASYGAGITLSGHNSPLELGNLDISCTDFNGDNAVSSITTMWP 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02120 306 SUPERFAMILY Leucine zipper domain 143 193 IPR046347 GO:0003700|GO:0006355
Vimu1g02120 306 MobiDBLite consensus disorder prediction 85 163 - -
Vimu1g02120 306 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 146 161 IPR004827 GO:0003700|GO:0006355
Vimu1g02120 306 Gene3D - 142 198 - -
Vimu1g02120 306 FunFam BZIP transcription factor 141 192 - -
Vimu1g02120 306 Coils Coil 159 193 - -
Vimu1g02120 306 PANTHER BASIC LEUCINE ZIPPER 63 75 280 - -
Vimu1g02120 306 MobiDBLite consensus disorder prediction 85 120 - -
Vimu1g02120 306 Pfam bZIP transcription factor 142 189 IPR004827 GO:0003700|GO:0006355
Vimu1g02120 306 SMART brlzneu 139 203 IPR004827 GO:0003700|GO:0006355
Vimu1g02120 306 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 141 204 IPR004827 GO:0003700|GO:0006355
Vimu1g02120 306 Coils Coil 201 221 - -
Vimu1g02120 306 CDD bZIP_plant_GBF1 144 195 IPR045314 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02120 Vimu-Chr1 30204301 30207902 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02120 91 306 bZIP Transcription Factor Family AT5G24800 50.216 2.97e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu1g02120 bZIP_1 6.6e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02120 K25784 - gmx:100776831 395.971